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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTGGTTATTTTGATGAGAAACAGGTGCTTTTGATATTCAGGGATGTGTGTAATGCAGTTCTTGCCATGCACTGCCAGTCCCCACCTATTGCACACCGgtaacaacaccatctaaattttcttaatgattgtcaaaatttgtgatctctttatattcttataaattctttaatttctttcttcatctgatcatttgaa...

Basic information

species Glycine max
transcript GLYMA08G15920.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15920.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0156g00640.t01 (Vitis vinifera), 5'ss of exon 3
GAGCTGGTTATTTTGATGAGAAACAGGTGCTTTTGATATTCAGGGATGTGTGTAATGCAGTTCTTGCCATGCACTGCCAGTCCCCACCTATTGCACACCGgtaacaacaccatctaaattttcttaatgattgtcaaaatttgtgatctctttatattcttataaattctttaatttctttcttca----tctgatc-atttgaa
|||| || |||||||| ||||||||||| ||||  || || |||||||| || ||||| ||| |||||||||||||||| |||||||| || || ||| |||||  ||||    ||  |  |  ||||| || ||    || || || |   || ||| || | ||   |||  ||    | || |    |||  || |||||  
GAGCCGGATATTTTGAGGAGAAACAGGTTCTTTCAATTTTTAGGGATGTCTGCAATGCGGTTTTTGCCATGCACTGCCAATCCCCACCCATAGCTCACAGgtaa-gacactga-tagttggtgctaatgtttatctt--ttggttatttaaatagattttttttaaacttttccttctcattttaaggactcttctctatttgc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717258|gb|BW659000.1|BW659000
EST:     TGTAATGCAGTTCTTGCCATGCACTGCCAGTCCCCACCTATTGCACACCG                         AGACTTGAAAGCAGAGAATCTTTTATTAGGTTCAGATGGCTTATGGAAGTT
genomic: TGTAATGCAGTTCTTGCCATGCACTGCCAGTCCCCACCTATTGCACACCGgtaacaacac ... tgtttcctagAGACTTGAAAGCAGAGAATCTTTTATTAGGTTCAGATGGCTTATGGAAGTT