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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAGgtgactacaatggattcttttattctaatactttttttgtttcttttgttctagtttttctgctgcatcatctgttgtttgagatcatttgactaattga...

Basic information

species Glycine max
transcript GLYMA08G15610.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15610.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G18680.1 (Arabidopsis thaliana), 5'ss of exon 3
ATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAGgtgactacaatggattcttttattctaatactttttttgtttcttttgttctagtttttctgctgcatcatctgttgtttgagat-catttgactaattga----
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GTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACTCGACTTGGCATTGAGgttatt-ctctaaacgcttc-attcaaacattcttgttctagttgtcattgtgataattg-gattcaaaattttttagtggatatgtattcagct--ttgagttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193656689|gb|FK603721.1|FK603721
EST:     CCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAG                         GTTGCACTGGTAGTTGGTGGGGGTAACATCTTCCGTGGATCCTCCTGGGCT
genomic: CCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAGgtgactacaa ... gatgtttcagGTTGCACTGGTAGTTGGTGGGGGTAACATCTTCCGTGGATCCTCCTGGGCT
EST: gi|16277118|gb|BI942213.1|BI942213
EST:     CCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAG                         GTTGCACTGGTAGTTGGTGGGGGTAACATCTTCCGTGGATCCTCCTGGGCT
genomic: CCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAGgtgactacaa ... gatgtttcagGTTGCACTGGTAGTTGGTGGGGGTAACATCTTCCGTGGATCCTCCTGGGCT