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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACATTGATTCTGCTGTCAGAACTTACCACATGATGTCTCAGAGATGGTTTACTCATGCATCTCCAACACTTTTCAATACAGAACACCTAGGCCTCAGgtatagtttctgttaatgctctttccctccatctctcccttttttgtgaacatttggtatgctttttgtccttattgtgtaag

Basic information

species Glycine max
transcript GLYMA08G15360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 4
ATGACATTGATTCTGCTGTCAGAACTTACCACATGATGTCTCAGAGATGGTTTACTCATGCATCTCCAACACTTTTCAATAC-AGAACACCTAGGCCTCAGgtatagtttctgttaatgctctttccctccatctctcccttttttgtgaacatttggtatgctttttgtccttattgtgtaag
 ||| ||||| |||||| ||| ||| |||||||||||||||||| | |||||||||||||| || ||||| ||||||||| |  | || || |||||||| |||   |   |  ||   |  ||    ||||  | |   || ||    |   | |  ||||||  |  ||  | || || |  
-TGATATTGAATCTGCTATCAAAACGTACCACATGATGTCTCAGCGCTGGTTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCACTCCAAGGCCTCAAgtaatatgcttccta---ccattgaagtccaatt-tggattattaaaaatggtctcttatgctcctc-tctgttttatgcag-

upper sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 4
ATGACATTGATTCTGCTGTCAGAACTTACCACATGATGTCTCAGAGATGGTTTACTCATGCATCTCCAACACTTTTCAATAC-AGAACACCTAGGCCTCAGgtatagtttctgttaatgctctttccctccatctctcccttttttgtgaacatttggt-atgctttttgtccttattgtgtaag
 ||||||||| |||||| |||  || |||||  ||||||||||| | |||||||||||||| || || || ||||||||| |  | || || ||||| || |||  |    | | |          |||   |||    || |   |  |    ||| | |  |||||  ||  |    || |  
-TGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCTCAGCGCTGGTTTACTCATGCTTCACCGACCCTTTTCAATGCTGGCACTCCAAGGCCCCAAgtactgcacatttgaccagaaaaatccta-gtcttggactct---gaaattgcttgcttactcttttattctctgcaatgcag-

upper sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 4
ATGACATTGATTCTGCTGTCAGAACTTACCACATGATGTCTCAGAGATGGTTTACTCATGCATCTCCAACACTTTTCAATAC-AGAACACCTAGGCCTCAGgtatagtttctgttaatgctctttccctccatctctcccttttttgtgaacatttggtatgctttttgtccttattgtgtaag
  |||||||| |||||  | || || |||||  ||||||| ||| | |||||||| |||||||| ||||||||||||||  |  | ||||| ||||| || |||  || |   ||  |||     |   | || ||    |   |||  |   |||  |     |||  |   | |  || |  
-AGACATTGAGTCTGCCATTAGGACGTACCATCTGATGTCCCAGCGCTGGTTTACACATGCATCACCAACACTTTTCAACGCTGGCACACCGAGGCCCCAAgtactgtcttgcttcctgc-----cagacgatgtcattgtgggttgaaattgtttacttactgtttcttttctgtgatgcag-

upper sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 4
ATGACATTGATTCTGCTGTCAGAACTTACCACATGATGTCTCAGAGATGGTTTACTCATGCATCTCCAACACTTTTCAATACAG-AACACCTAGGCCTCAGgtatagtttctgttaatgc--------tctt------tccctccatctctcccttttttgtgaacatttggt-atgctttttgtc--cttattgtgtaag---------------------------------------------------------------------------
 |||||||||||||||| ||| ||| |||||  | ||||||||| | ||||| |||||||| || || || ||||||||| ||| |||||| ||||| || ||||  ||       |           | ||          ||||| |  | ||||||  |     |||  | ||   |||| |    | |||||| ||                                                                            
-TGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAAgtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaacagtgtacattggtctttgctaatttctgtgttctgttatgtgctgacag