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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCACTCCGGGAGCTGACAAGTCTAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGATgtgagtttcagaaatcttttaattcttagtatcaaatggaatgagcagtgcttttaaatatgtaatatgtaaatatctcgattgtatacatgtggcaactagtaatttctattaagactttcaatcttgaaaacacatgtttcttgtaagttgtatgcattcttaaccaacaagtaacaaaaatctttgatggtgcag

Basic information

species Glycine max
transcript GLYMA08G14970.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14970.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G21960.1 (Arabidopsis thaliana), 5'ss of exon 3
ACATCACTCCGGGAGCTGACAAGTCTAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGATgtgagtttcagaaatcttttaattcttagtatcaaatggaatgagcagtgcttttaaatatgtaatatgtaaatatctcgattgtatacatgtggcaactagtaatttctattaagactttcaatcttgaaaacacatgtttcttgtaagttgtatgcattcttaaccaacaagtaacaaaaatctttgatggtgcag
|||||||| ||||||||||||| ||| || || || || ||||||| ||| || || ||||||||||| |||||||| || ||| |   |||| | |  | ||   |      ||||      |   || |  | |||| | | |    ||   | || | |  ||   |    |  ||| ||  | |||  |                                                                                
ACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGATgtaaggttctg---tcttgttaagcctatctttggcaagaat---tgatttattgaggtttgtagtgtatgttaattaaggttctctgaattctga---ttttaagtttgagtaatgcag------------------------------------------------------------------------------

upper sequence: GLYMA08G14970.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ23530 (Selaginella moellendorffii), 5'ss of exon 2
ACATCACTCCGGGAGCTGACAAGTCTAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGATgtgagtt----tcagaaatcttttaa---ttcttagtatcaaatggaatgagcagtgcttttaaatatgtaatatgtaaatatctcgattgtatacatgtggcaactagtaatttctattaagactttcaatcttgaaaacacatgtttcttgtaagttgtatgcattcttaaccaacaagtaacaaaaatctttgatggtgcag
|| |   | || ||||| ||    || ||| | |||||||| |||||||| || ||||| |||||| |||||||||||||||    |||    |  |||     || ||  | |||  ||   |      |||| ||  |                                                                                                                                            
ACGTACTTGCGCGAGCTAACTTCGCTGGGACTGAAAAACGCGGAGAATCTCGCTATTCCGAGTGTCCGAAACGATgtgagttactctcactgttgctttgggtttttttcctgtcagctgatgt---tgatgctcttgcag-------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA08G14970.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ34800 (Selaginella moellendorffii), 5'ss of exon 2
ACATCACTCCGGGAGCTGACAAGTCTAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGATgtgagtt----tcagaaatcttttaa--ttcttagtatcaaatggaatgagcagtgcttttaaatatgtaatatgtaaatatctcgattgtatacatgtggcaactagtaatttctattaagactttcaatcttgaaaacacatgtttcttgtaagttgtatgcattcttaaccaacaagtaacaaaaatctttgatggtgcag
|| |   | || ||||| ||    || ||| | |||||||| |||||||| || ||||| |||||| |||||||||||||||    |||    |  |||    || ||  | | |  || | |      |||| ||  |                                                                                                                                            
ACGTACTTGCGCGAGCTAACTTCGCTGGGACTGAAAAACGCGGAGAATCTCGCTATTCCGAGTGTCCGAAACGATgtgagttactctcactgttactttgggttttttcctgtgagctgaagt---tgatgctcttgcag-------------------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295227|gb|FG986946.1|FG986946
EST:     TAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGAT                         GCAGCTTTTCTTTTTACTGTGGTTGGAACAACAGGATTTCTGGGTGTTCTG
genomic: TAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGATgtgagtttca ... gatggtgcagGCAGCTTTTCTTTTTACTGTGGTTGGAACAACAGGATTTCTGGGTGTTCTG
EST: gi|120532690|gb|EH260823.1|EH260823
EST:     TAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGAT                         GCAGCTTTTCTTTTTACTGTGGTTGGAACAACAGGATTTCTGGGTGTTCTG
genomic: TAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGATgtgagtttca ... gatggtgcagGCAGCTTTTCTTTTTACTGTGGTTGGAACAACAGGATTTCTGGGTGTTCTG
EST: gi|209700580|gb|BW670408.1|BW670408
EST:     TAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGAT                         GCAGCTTTTCTTTTTACTGTGGTTGGAACAACAGGATTTCTGGGTGTTCTG
genomic: TAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGATgtgagtttca ... gatggtgcagGCAGCTTTTCTTTTTACTGTGGTTGGAACAACAGGATTTCTGGGTGTTCTG
EST: gi|120533478|gb|EH261611.1|EH261611
EST:     TAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGAT                         GCAGCTTTTCTTTTTACTGTGGTTGGAACAACAGGATTTCTGGGTGTTCTG
genomic: TAGGAATTAAAAACGCAGAGAATCTTGCAATTCCTAGTGTCAGAAACGATgtgagtttca ... gatggtgcagGCAGCTTTTCTTTTTACTGTGGTTGGAACAACAGGATTTCTGGGTGTTCTG