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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTCTTGGTATGATTTCTTTGAGAAATGCATATCATGGGGGGAGTTCTAGTACACTTGGTTTGACTGCTCTGAACACGTGGAAATACCCAATTCCAGAGgtttgtctgtatattcaattgattggttgatcctacatggaaactattcttacaatgatttaaaccttttag

Basic information

species Glycine max
transcript GLYMA08G14850.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14850.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G124353_T01 (Zea mays), 5'ss of exon 3
TAGTCTTGGTATGATTTCTTTGAGAAATGCATATCATGGGGGGAGTTCTAGTACACTTGGTTTGACTGCTCTGAACACGTGGAAATACCCAATTCCAGAGgtttgt---ctgtatattcaa--ttgattggttgatcctacatggaaactattcttacaatgatttaaaccttttag-------------------------------------------------------------------------------------------------
 | |||  ||||| || |  | ||||||||||||||||| || ||| |  ||||  |||| ||||||| | || | ||||||||||||||||||||  |||| |||   | || ||||     || ||    | ||   || |||  | | || | | | | |  |      |  ||                                                                                                 
GAATCTCAGTATGGTTGCGCTCAGAAATGCATATCATGGCGGAAGTGCCGGTACGATTGGATTGACTGGTATGCAGACGTGGAAATACCCAATTCCTCAGgtatgtgtacagtgtattgcgctttcatcaaattatttgac-tggtta-tgttttcaaagtcacatgtttgctgcagtagattcttagttatcaataattatctccgttctacccagcaaaaatgtatccatttctttattacatctatcatagcctcataagaatttttgcag

upper sequence: GLYMA08G14850.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g01330.t01 (Vitis vinifera), 5'ss of exon 3
TAGTCTTGGTATGATTTCTTTGAGAAATGCATATCATGGGGGGAGTTCTAGTACACTTGGTTTGACTGCTCTGAACACGTGGAAATACCCAATTCCAGAGgtttgtctgtatattcaattgattggttgatcc-tacatggaaactattctt-----acaatgatttaaacct-tttag----------------------
|| ||||||||||||||| || ||||||||||||||||| || |||||| ||||| ||||  | |||||||||||||||||||| ||| |||| |||||||||||| ||   | | | | |      |||| | | | ||   |||  | ||     ||||   ||    ||  ||||                       
TAATCTTGGTATGATTTCCTTAAGAAATGCATATCATGGTGGAAGTTCTGGTACAATTGGACTCACTGCTCTGAACACGTGGAAGTACTCAATACCAGAGgtttgtttgaccact-agtggtgcaaatgattcatgcttgttcacttcttttggctcacaaaatttgctgccaatttaattgttgatgaagaggcacaaca