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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGgtatgcatataaccttttactctttttaatttaattgggctttttagctatccattgttgtctatttatttactttgttgtgtaaaagctataaagatta...

Basic information

species Glycine max
transcript GLYMA08G14780.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331293|gb|FK021004.1|FK021004
EST:     AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGG                         GATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
genomic: AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGgtatgcatat ... gttggctcagGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
EST: gi|298182193|gb|HO026368.1|HO026368
EST:     AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGG                         GATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
genomic: AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGgtatgcatat ... gttggctcagGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
EST: gi|298192264|gb|HO036346.1|HO036346
EST:     AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGG                         GATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
genomic: AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGgtatgcatat ... gttggctcagGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
EST: gi|192331184|gb|FK020951.1|FK020951
EST:     AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGG                         GATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
genomic: AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGgtatgcatat ... gttggctcagGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
EST: gi|298191659|gb|HO039138.1|HO039138
EST:     AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGG                         GATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
genomic: AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGgtatgcatat ... gttggctcagGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
EST: gi|192327943|gb|FK022474.1|FK022474
EST:     AGG-A-A-GAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGG                         GACTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
genomic: AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGgtatgcatat ... gttggctcagGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
EST: gi|298177830|gb|HO027383.1|HO027383
EST:     AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGG                         GATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
genomic: AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGgtatgcatat ... gttggctcagGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
EST: gi|298178454|gb|HO024189.1|HO024189
EST:     AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGG                         GATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
genomic: AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGgtatgcatat ... gttggctcagGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
EST: gi|298194036|gb|HO040684.1|HO040684
EST:     AGGAAGAGGAGGAGGAGCTCACGGAACCTAAAATAAAGCTTGCTATGTGG                         GATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA
genomic: AGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGgtatgcatat ... gttggctcagGATTTTGGGCAATGCGATGCCAAAAAGTGCACTGGACGCAAGCTTTCAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGAAAATGGTGAGGGCGAGGAAGAGGAGGAGGAACTCACGGAACCTAAAATAAAGCTTGCTATGTGGgtatgcatataaccttttactctttttaatttaattgggctttttagctatccattgttgtctatttatttactttgttgtgtaaaagctataaagatta

- - - - - - - - -  GGAAGA
- - - - - - - - - -  AAGAGG
- - - - - - - - - - - AGAGGA
- - - - - - - - - - -  GAGGAG
- - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - GGAGGA