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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAAAACCAAGTGATAGTATGAGGCTTATTGTGACAACTTTTGTTGGAATAGTTTTTGGCTTCTTTATAGGAGTATCATTTCCAGCATTGACTACAAAGgtgcagacttttagcatcttcttgttaatacttatcttgtcctttggcaattgatgataaaatgttgtcgatcttaataatggaactctaatggtactttaacaatttgcag

Basic information

species Glycine max
transcript GLYMA08G14040.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 3
CAGAAAACCAAGTGATAGTATGAGGCTTATTGTGACAACTTTTGTTGGAATAGTTTTTGGCTTCTTTATAGGAGTATCATTTCCAGCATTGACTACAA---AGgtgcagacttttagcatcttcttgttaatacttatcttgtcctttggcaattgatgataaaatgttgtcgatcttaataatggaactctaatggtactttaacaatttgcag--------------------------
   |||||||| ||| | ||||||||||||||| |||| || ||||||| | |||||||||||  | |||||| |||| |||||| | ||| | | ||   |||| ||      | |    |  || ||  |  || | |||||   |  |  ||      |   | |||   ||  |  || |     | ||||  | ||| |   |||                               
---AAAACCAAATGAGACTATGAGGCTTATTGTAACAATTTCTGTTGGAGTTGTTTTTGGCTTTCTAATAGGAATATCTTTTCCAACTTTGTCAATAACTAAGgtacaattgcattgttcttagttttttgtttttgttttgtctcctctctgttatgttcatggttttgctaattatttta-tcttgttgtaatattgcttgagttattaaacttgtttcactatgtcaaattttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709653|gb|BF009377.1|BF009377
EST:     TAGTTGTTGGCTTCTTTATAGGAGTATCATTTCCAGCATTGACTACAAAG                         TTGAATCTCCCATCCAGC
genomic: TAGTTTTTGGCTTCTTTATAGGAGTATCATTTCCAGCATTGACTACAAAGgtgcagactt ... caatttgcagTTGAATCTCCCATCCAGC
EST: gi|37996138|gb|CF807727.1|CF807727
EST:     TAGTTTTTGGCTTCTTTATAGGAGTATCATTTCCAGCATTGACTACAAAG                         TTGAATCTCCCATCCAGCCTGCTTCCTGCCATTGATATTTCTTACATTCAA
genomic: TAGTTTTTGGCTTCTTTATAGGAGTATCATTTCCAGCATTGACTACAAAGgtgcagactt ... caatttgcagTTGAATCTCCCATCCAGCCTGCTTCCTGCCATTGATATTTCTTACATTCAA