1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCATgtgagaaaattcaagcatccttgttttttgagttattgtctaatgttgtagttttttcttccataatgtaatttttttttttttttggtttcaaccag
species | Glycine max |
transcript | GLYMA08G13680.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCAT GGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGTEST: gi|213615293|gb|DB963487.1|DB963487
genomic: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCATgtgagaaaat ... tttcaaccagGGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGT
EST: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCAT GGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGTEST: gi|213589389|gb|DB961722.1|DB961722
genomic: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCATgtgagaaaat ... tttcaaccagGGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGT
EST: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCAT GGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGTEST: gi|213590572|gb|DB968122.1|DB968122
genomic: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCATgtgagaaaat ... tttcaaccagGGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGT
EST: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCAT GGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGTEST: gi|209717579|gb|BW679686.1|BW679686
genomic: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCATgtgagaaaat ... tttcaaccagGGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGT
EST: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCAT GGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGTEST: gi|209723170|gb|BW675116.1|BW675116
genomic: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCATgtgagaaaat ... tttcaaccagGGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGT
EST: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCAT GGTGAAGCGCAGGATTATCTTTTTATTGCAACTGANAGATACAAATTCTGT
genomic: ATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCATgtgagaaaat ... tttcaaccagGGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCATgtgagaaaattcaagcatccttgttttttgagttattgtctaatgttgtagttttttcttccataatgtaatttttttttttttttggtttcaaccag
- - - - - - - - - - - TGGAAG
- - - - - - - - - - - - GGAAGA