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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGCAAACACAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAAGATATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaatacatcctgtaattttttttcaatttcatgtgtgattgttgtctaaattttgcagcttgtcgcttgtttccctttttactattttgtttctg...

Basic information

species Glycine max
transcript GLYMA08G13560.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGGCAAACACAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAAGATATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaatacatcctgtaatttttt-ttcaatttcatgtgtgattgttgtctaaatt-ttgcagcttgtcgcttgtttccctttttactattttgtttctg
 || ||||| |||||||||||||| ||||| || |||||  | ||||||||||||||  | || ||||| ||||| ||||  |||||||||||  |||||||  | ||   ||  | |  |    | |||||| ||| || ||  |||||  |   || |||| |  |  |    |  |   | |   | | | |    |  
GAGACAAACTCAGGTGATGGGTGTCATGAAGCAGGAGCAAGCAGAAAGATATTTGCGGATGGAGCATCTTCTAGTCAGAAGCTATTTTGATCCGCATGAGgtatggaaactatattatgctcgactattcaatatcacgt-tgggtgttgcttttgttgttgctgtgtcacctaagcatggttgtccgcaactgttcaaca-

upper sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 3
AAGGCAAACACAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAAGATATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaatacatcctgtaattttttttcaatttcatgtgtgattgttgtctaaattttgcagcttgtcgcttgtttccctttttactattttgtttctg-------
||| ||||| ||||  |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| || ||| ||||||||||||||||| ||||||||||||  |     | ||||  |   |   | ||||   | |    |       | || ||  ||  |  |  ||| | |   |    || ||  |          
AAGACAAACTCAGGCAATGGGTGTCATGAAACAAGAGCAGCCTGAAAGATACTTGCGTCTTGAGCATCTTCTTGTTCGAACTTATTTTGATCCACATGAGgttagaatgatggttt-taatcatacattg-tatcattcttcacacctac-----tcttccattttaccattgtttttcataagtgagtttctgaatacagtgggat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208036629|gb|GD834418.1|GD834418
EST:     ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAG                         GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
genomic: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... tatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
EST: gi|151399243|gb|EV269114.1|EV269114
EST:     ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAG                         GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
genomic: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... tatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
EST: gi|209709054|gb|BW658770.1|BW658770
EST:     ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAG                         GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
genomic: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... tatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
EST: gi|207757097|gb|GD730055.1|GD730055
EST:     ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAG                         GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
genomic: ATTTGCGTCTTGAACATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... tatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG