Sequence
atgc intronic sequence ATGC exonic sequenceTCCTGTCGCCAAGGGAAGAAACTGCTTGTTCTGGATATTGATTACACTCTCTTTGATCACCGCTCCACTGCTGAGAACCCTCTTCAACTCATGAGACCCTgtaatttcatttccccccttccttctctcttagcatttccattcaaaaatgccatttttaatcactgaaattatcgaatcttggcatctttagtccttag...
Basic information
species | Glycine max |
transcript | GLYMA08G13320.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G13320.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0035g00640.t01 (Vitis vinifera), 5'ss of exon 3
TCCTGTCGCCAAGGGAAGAAACTGCTTGTTCTGGATATTGATTACACTCTCTTTGATCACCGCTCCACTGCTGAGAACCCTCTTCAACTCATGAGACCCTgtaatttcatttccccccttccttctctcttagcatttccattcaaaaatgccatttttaatcactgaaattatcgaatcttggcatctttagtccttag
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CCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATATCGATTATACTCTATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtccctttgtggcaattgtactttagtctttt---------gtgtttgttctagtgacaaatgat-ttaaatattgtcttgtgcag-------
upper sequence: GLYMA08G13320.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ35150 (Selaginella moellendorffii), 5'ss of exon 3
TCCTGTCGCCAAGGGAAGAAACTGCTTGTTCTGGATATTGATTACACTCTCTTTGATCACCGCTCCACTGCTGAGAACCCTCTTCAACTCATGAGACCCTgtaatttcatttccccccttccttctctcttagcatttccattcaaaaatgccatttttaatcactgaaattatcgaatcttggcatctttagtccttag
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CCTTGTCGCCCGGGAAAGAAACTTCTCGTTTTGGATATTGATTACACGCTCTTTGATCATCGTTCCACCGCCGAGAATCCCCTGGAGCTGATGCGCCCGTgtaagtcggtcgtggagcacacaaaggctgtgatcttttc--tcatgaacttcgcttttgacag------------------------------------
upper sequence: GLYMA08G13320.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ24099 (Selaginella moellendorffii), 5'ss of exon 3
TCCTGTCGCCAAGGGAAGAAACTGCTTGTTCTGGATATTGATTACACTCTCTTTGATCACCGCTCCACTGCTGAGAACCCTCTTCAACTCATGAGACCCTgtaatttcatttccccccttccttctctcttagcatttccattcaaaaatgccatttttaatcactgaaattatcgaatcttggcatctttagtccttag
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CCTTGTCGCCCGGGAAAGAAACTTCTCGTTTTGGATATTGATTACACGCTCTTTGATCATCGTTCCACCGCCGAGAATCCCCTGGAGCTGATGCGCCCGTgtaagtcggtcgtggagcacacaaaggctgtgatcttttc--tcatgaactttgcttttgacag------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16347120|gb|BI972715.1|BI972715EST: CTTTGATCACCGCTCCACTGCTGAGAACCCTCTTCAACTCATGAGACCCT ACCTTCACGAGTTTCTTACTTCAGTTTATTCTGAGTATGACATTATGATAT
genomic: CTTTGATCACCGCTCCACTGCTGAGAACCCTCTTCAACTCATGAGACCCTgtaatttcat ... ccttttgcagACCTTCACGAGTTTCTTACTTCAGTTTATTCTGAGTATGACATTATGATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCTGTCGCCAAGGGAAGAAACTGCTTGTTCTGGATATTGATTACACTCTCTTTGATCACCGCTCCACTGCTGAGAACCCTCTTCAACTCATGAGACCCTgtaatttcatttccccccttccttctctcttagcatttccattcaaaaatgccatttttaatcactgaaattatcgaatcttggcatctttagtccttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctc