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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAAAAGTTATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGgtaagccaatatttatattcatagctgttaccatctccctatattttgacacatgctgataatttttcatcttag

Basic information

species Glycine max
transcript GLYMA08G12370.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10235469|gb|BE804357.1|BE804357
EST:     ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTG                         GCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAG
genomic: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGgtaagccaat ... ttcatcttagGCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAG
EST: gi|15287293|gb|BI471184.1|BI471184
EST:     ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTG                         GCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAG
genomic: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGgtaagccaat ... ttcatcttagGCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAG
EST: gi|207735962|gb|GD709825.1|GD709825
EST:     ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTG                         GCTAAATGCTTAGGAAAACTGGACGAGCCAGTGGC
genomic: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGgtaagccaat ... ttcatcttagGCTAAATGCTT-GGAAA-CTGG-CGAGCCAGTGGC
EST: gi|209727967|gb|BW666687.1|BW666687
EST:     ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTG                         GCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAG
genomic: ATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGgtaagccaat ... ttcatcttagGCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAG