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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCTTTGAGATGATTGATGCATTTGCGGAGTCACAGGGGATTCCTATGGACACTGTTCACTCCAAAGCTATTTTTGGAAAAGgttttttgtctgcctcatttgatattcctgttttctgtttatctttcaatgcttgttgtaatttgtgaatcttaggcactgtggtcgtttgttacag

Basic information

species Glycine max
transcript GLYMA08G12110.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12110.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g00560.t01 (Vitis vinifera), 5'ss of exon 2
GTTGGCTTTGAGATGATTGATGCATTTGCGGAGTCACAGGGGATTCCTATGGACACTGTTCACTCCAAAGCTATTTTTGGAAAAGgttttttgtctgcctcatttgatattcctgttttctgtttatctttcaatgcttgttgtaatttgtgaatcttaggcactgtggtcgtttgttacag
|| || |||||||||||  |||| ||||| || ||||| |||||||| |||||||| ||||| | |||||| || |||||| |||||    |||| || |||||    | || || | |   |  || || || | | |  |   |||| | |   |||     |||     | |||  |||
GTGGGGTTTGAGATGATCAATGCCTTTGCTGAATCACAAGGGATTCCAATGGACACAGTTCATTGCAAAGCAATCTTTGGACAAGgtc---tgtcagcttcattc--cactcatgctcttcataaatattccagtacataattgcatttatca---ttaaattttgtttatttatgtctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327645|gb|FK020664.1|FK020664
EST:     ACAGGGGATTCCTATGGACACTGTTCACTCCAAAGCTATTTTTGGAAAAG                         GTTTTGTTGGTGAAGTTCCTGTTTTCCTTGCAAAGCCTCAAACTTACATGA
genomic: ACAGGGGATTCCTATGGACACTGTTCACTCCAAAGCTATTTTTGGAAAAGgttttttgtc ... tttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTCCTTGCAAAGCCTCAAACTTACATGA
EST: gi|192326838|gb|FK015110.1|FK015110
EST:     ACAGGGGATTCCTATGGACACTGTTCACTCCAAAGCTATTTTTGGAAAAG                         GTTTTGTTGGTGAAGTTCCTGTTTTCCTTGCAAAGCCTCAAACTTACATGA
genomic: ACAGGGGATTCCTATGGACACTGTTCACTCCAAAGCTATTTTTGGAAAAGgttttttgtc ... tttgttacagGTTTTGTTGGTGAAGTTCCTGTTTTCCTTGCAAAGCCTCAAACTTACATGA