1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAgtatgctgtctctctctgcttcattgcacatttgctccattttattgtttcctttttatatttttatctaaatctaattgataatggaaaaccatttaaa...
species | Glycine max |
transcript | GLYMA08G11740.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTCCGTGTCAAGAAGTCGAAGGGCATAACAAGCCCGAGGTTGAACTCAA GACCAGCCCCGAACTCCTGCTCAATCCCEST: gi|192307232|gb|FK001232.1|FK001232
genomic: TTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAgtatgctgtc ... ttatgtgcagGACCAGCCCCGAACTCCTGCTCAATCCC
EST: TTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAA GACCAGCCCCGAACTCCTGCTCAATCCCEST: gi|192325005|gb|FK016146.1|FK016146
genomic: TTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAgtatgctgtc ... ttatgtgcagGACCAGCCCCGAACTCCTGCTCAATCCC
EST: TTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAA GACCAGCCCCGAACTCCTGCTCAATCCCEST: gi|298187154|gb|HO034303.1|HO034303
genomic: TTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAgtatgctgtc ... ttatgtgcagGACCAGCCCCGAACTCCTGCTCAATCCC
EST: TTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAA GACCAGCCCCGAACTCCTGCTCAATCCCEST: gi|15287594|gb|BI471485.1|BI471485
genomic: TTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAgtatgctgtc ... ttatgtgcagGACCAGCCCCGAACTCCTGCTCAATCCC
EST: TTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAA GACCAGCCCCGAACTCCTGCTCAATCCCEST: gi|298177566|gb|HO027233.1|HO027233
genomic: TTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAgtatgctgtc ... ttatgtgcagGACCAGCCCCGAACTCCTGCTCAATCCC
EST: TTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGATGTTGAACTCAA GACCAGCCCCGAACTCCTGCTCAATCCC
genomic: TTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAgtatgctgtc ... ttatgtgcagGACCAGCCCCGAACTCCTGCTCAATCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAgtatgctgtctctctctgcttcattgcacatttgctccattttattgtttcctttttatatttttatctaaatctaattgataatggaaaaccatttaaa
- - - - - - AAGAAG
- - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc