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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATACTGGGGATTGACCACTCTGGATCTTCTAGGAAAGCTTCATTCTGTCGATGTTGATGAGGTTGTTTCATGGTTGATGAGTTGTCAGCATGAGTCAGgtggttcttcagtgttttatttattcccttaatttgagacatcggtgtcattgatagtttcttatgagaaatatgtgttgttgtgaag

Basic information

species Glycine max
transcript GLYMA08G11710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G11710.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0134g00150.t01 (Vitis vinifera), 5'ss of exon 3
GCATACTGGGGATTGACCACTCTGGATCTTCTAGGAAAGCTTCATTCTGTCGATGTTGATGAGGTTGTTTCATGGTTGATGAGTTGTCAGCATGAGTCAGgt-------ggttcttcagtgttttattta---ttccctta-atttgagacatcggtgtcattg-atagtttcttatgagaa-atatgtgttgtt-gtgaag
||||||||||||||||||||||| |||||||| ||||||||  |    || |||   ||||| |||||||||||| | |||   ||||| ||||| || |||       | | ||  | || | |    |   |    |||  | | |||  ||| | | |  |   |     | ||| ||  ||     |||||  || ||
GCATACTGGGGATTGACCACTCTAGATCTTCTTGGAAAGCTGGAAATAGTGGATCAAGATGAAGTTGTTTCATGGGTCATGGAGTGTCAACATGAATCTGgtttgttaagctgctaaaatggtctccccaaagtatttttatgtattagatttcgttataaaagtggaagccatgatgggaccatgcactttgtttatgcag

upper sequence: GLYMA08G11710.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0024g00080.t01 (Vitis vinifera), 5'ss of exon 3
GCATACTGGGGATTGACCACTCTGGATCTTCTAGGAAAGCTTCATTCTGTCGATGTTGATGAGGTTGTTTCATGGTTGATGAGTTGTCAGCATGAGTCAGgt-------ggttcttcagtgttttatttat----tcccttaatttgagacatcggtgtcattgatagtttctt-atgagaa-atatgtgttgtt-gtgaag
|||||||||||| |||| ||||| |||||||||||||||||  |    || ||||  |||||  |  |||| ||| | |||   || || ||||| || |||       | | ||    || ||   | ||    || |||  |   | |  |   | | |  |    |  | | || |||  | |  | |||||  || ||
GCATACTGGGGACTGACTACTCTAGATCTTCTAGGAAAGCTGGACATGGTTGATGAAGATGAAATCATTTCGTGGGTAATGGAGTGCCAACATGAATCTGgtttgtgaagctgctatcatggttccctcatggtatctctttttactaaattttattataaaagtggatcacatgataagatcacacattttgtttatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397834|gb|EV267707.1|EV267707
EST:     CGATGTTGATGAGGTTGTTTCATGGTTGATGAGTTGTCAGCATGAGTCAG                         GGGGATTTGGTGGAAATGTTGGACATGATCCGCACATCCTGTATACACTAA
genomic: CGATGTTGATGAGGTTGTTTCATGGTTGATGAGTTGTCAGCATGAGTCAGgtggttcttc ... tgttgtgaagGGGGATTTGGTGGAAATGTTGGACATGATCCGCACATCCTGTATACACTAA
EST: gi|151410609|gb|EV280424.1|EV280424
EST:     CGATGTTGATGAGGTTGTTTCGTGGTTGATGAGTTGTCAGCATGAGTCAG                         GGGGATTTGGTGGAAATGTTGGACATGATCCGCACATCCTGTATACACTAA
genomic: CGATGTTGATGAGGTTGTTTCATGGTTGATGAGTTGTCAGCATGAGTCAGgtggttcttc ... tgttgtgaagGGGGATTTGGTGGAAATGTTGGACATGATCCGCACATCCTGTATACACTAA