1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGTCCCTACAACGGTCCCAGAGgtacggatgccctattgcgccttttaataatatggctcataattattggttgattctatatatcatcgaagtggttattgtatcccacaattccactgtt...
species | Glycine max |
transcript | GLYMA08G11120.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG GAACCTTATGGGEST: gi|207784105|gb|GD758415.1|GD758415
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGTCCCTACAACGGTCCCAGAGgtacggatgc ... accctcccagGAACCTTATGGG
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCNGAG GAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCEST: gi|193534527|gb|FK492457.1|FK492457
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGTCCCTACAACGGTCCCAGAGgtacggatgc ... accctcccagGAACCTTATGGGAGAAGATCTTGGCCCTTTAAGC
EST: CCCTACAACGGTCCCAGAG GAACCTTATGGGAGAAGATCTTGGCCCTTTAAGTCAGCAAAGAGCTGGAGTEST: gi|208046011|gb|GD848189.1|GD848189
genomic: CCCTACAACGGTCCCAGAGgtacggatgc ... accctcccagGAACCTTATGGGAGAAGATCTTGGCCCTTTAAG-CAGCAAAGAGCTGGAGT
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAG GAACCTTATGGGEST: gi|208218709|gb|GE017021.1|GE017021
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGTCCCTACAACGGTCCCAGAGgtacggatgc ... accctcccagGAACCTTATGGG
EST: GAGTACTTGAAGCTGAAGGCACGTTATGAGTCCCTACAACGGTCCCAGAG GAACCTTATGGGAGAAGATCTTGGCCCTTTAAGCAGCAAAGAGCTGGAGTC
genomic: GAGTACTTGAAGCTGAAGGCACGTTATGAGTCCCTACAACGGTCCCAGAGgtacggatgc ... accctcccagGAACCTTATGGGAGAAGATCTTGGCCCTTTAAGCAGCAAAGAGCTGGAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGTCCCTACAACGGTCCCAGAGgtacggatgccctattgcgccttttaataatatggctcataattattggttgattctatatatcatcgaagtggttattgtatcccacaattccactgtt
- - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - CTGAAG