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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCGATCGAGGATTTACCGCCATTGGAACTGGAGGTGAGGATTTTGTGCAAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctatatcaagtcatttatggaaattgaactttcgttatcggataagttttactattatatgataaaactccaaatgacatccattttgatgtca...

Basic information

species Glycine max
transcript GLYMA08G10990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10990.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g31690.2 (Oryza sativa), 5'ss of exon 3
AACCGATCGAGGATTTACCGCCATTGGAACTGGAGGTGAGGATTTTGTGCAAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgt----atatcta-----tatcaagtcatttatggaaattgaactttcgttatcggataagttttactattatatgataaaactccaaatgacatccattttgatgtca
 ||  || |||||||||| || ||||| ||||||||||| |||||||| ||  | ||||||||||| || ||||||||  | ||| |||| |||||  ||||    || || |     |   ||  | ||||| ||  |  |  ||| ||  |   | || |      |||  ||    ||| | || ||  |   | ||||       
CACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGgttaaaatttccagctgttgaaaacacttttattgatgtccatgttttgtactaaaagaaatgcactaattccatag--aaatttcagattgctagcctttt-------

upper sequence: GLYMA08G10990.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G025042_T01 (Zea mays), 5'ss of exon 3
AACCGATCGAGGATTTACCGCCATTGGAACTGGAGGTGAGGATTTTGTGCAAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctatatcaagtcatttatggaaattgaac--tttcgttatcggataagttttactattata-tgataaaactccaaatgacatccattttgatgtca
 || ||| |||||||||| || ||||| ||||||||||| |||||||| ||  | ||||| |||||||| ||||||||  | ||| || |||||||  ||||   | | |||||      | ||      | |||  | | ||||||    |     |   |||| | || ||   ||      |    | ||  |   |   
CACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTGATGATTTTGTCCAGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagtttttatcattcttataattatttgtaaaccatgtagttatcaacaagaagatgtgattagactgctagtgctttgcgcggagccaatacttccg---

upper sequence: GLYMA08G10990.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0010g03660.t01 (Vitis vinifera), 5'ss of exon 3
AACCGATCGAGGATTTACCGCCATTGGAACTGGAGGTGAGGATTTTGTGCAAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctatatcaagtcatttatggaaattgaactttcgttatcggataagttttactatt-atatgataaaactccaaatgacatccattttgatgtca--------
||| | | |||| ||||| || ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| | ||||| ||||| ||| ||||| ||       |  ||| || | | || ||   ||| |||  |  | | |||||    || ||    | | ||  | || || ||  | ||| | || |        
AACAGTTAGAGGGTTTACTGCAATTGGAACTGGAGGTGACGATTTTGTGCAAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAGgtacat-------agatcacttgttgcaaatg--tttttgttgactaagatgttttctagtttatgcattgatacatccaaggaaataaactttaaggtgaccatttaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5605980|gb|AI900078.1|AI900078
EST:     AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG                         GGATATGTGAAGCAAAAGTTATCGTCGGNGGGCAAATATGTATCTGTAAAT
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: gi|5606926|gb|AI901024.1|AI901024
EST:     GTCGAATCTGTAATCCAACAACCAATTCCTCAG                         GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
genomic: GTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: gi|7796482|gb|AW781879.1|AW781879
EST:     AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG                         GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: gi|20811540|gb|BQ296018.1|BQ296018
EST:     AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG                         GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: gi|298197438|gb|HO044917.1|HO044917
EST:     AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG                         GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: gi|22541149|gb|BU090992.1|BU090992
EST:     AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG                         GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: gi|21888824|gb|BQ742037.1|BQ742037
EST:     AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG                         GGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT
EST: gi|6481967|gb|AW201238.1|AW201238
EST:     AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAG                         GGATATGTGAAGCAAAAGTTATCGTCGGCGGGCAAATATGTATCTGTAAAT
genomic: AAGCCATGGTTGTTGCTGTCGAATCTGTAATCCAACAACCAATTCCTCAGgtatatctat ... tttattacagGGATATGTGAAGCAAAAGTTATCGTCGGGGGGCAAATATGTATCTGTAAAT