1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATACTGTAGTTGGATTTCTGTTGGCTGGAGTGGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccactgaattatatgttactaactattctgtagtctgagtatcgttggttttaaccccctaaaacctacaatgtttttcttgtgaaattgtacat...
species | Glycine max |
transcript | GLYMA08G09570.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAATTTTCAEST: gi|192319436|gb|FK005876.1|FK005876
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTC--A-----Agtatgccact ... tgat
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAATTTTCAEST: gi|209720495|gb|BW674678.1|BW674678
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTC--A-----Agtatgccact ... tgat
EST: GGAAATGTTGACATACGGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCGTTCAAAGAATTTACAACAAGGCEST: gi|254338552|gb|GR845695.1|GR845695
genomic: GGAAATGTTGACATACG-TAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|9984254|gb|BE658362.1|BE658362
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|31470010|gb|CD412038.1|CD412038
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACCAATTACCTCATTGTGGATTCAT AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|21887354|gb|BQ740567.1|BQ740567
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|193682983|gb|FK625131.1|FK625131
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|58016543|gb|CX703285.1|CX703285
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|298198565|gb|HO040104.1|HO040104
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGCTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|6952212|gb|AW424280.1|AW424280
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|192294996|gb|FG986715.1|FG986715
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|207759516|gb|GD733931.1|GD733931
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACCGTCAAACAAEST: gi|193363933|gb|FK332147.1|FK332147
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAA
EST: GGAAATGTTGACATACGTAGGAAGTACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|213611466|gb|DB984002.1|DB984002
genomic: GGAAATGTTGACATACGTAGGAAG-ACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: ATTGTGGATTCAA AAACAACTGGCAAACAAATTGAGGATGCATTCAAAGAATTTACTTCAAGGGEST: gi|213604582|gb|DB966669.1|DB966669
genomic: ATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|8284082|gb|BE021641.1|BE021641
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|193347072|gb|FK311404.1|FK311404
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATTGTCATTCAAAGAATTTACAACAAGEST: gi|298165832|gb|HO008803.1|HO008803
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGAT-G-CATTCAAAGAATTTACAACAAG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|213604487|gb|DB983519.1|DB983519
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: AGACAAATTACCTCATTGTGGATTCAA AAACAACAT-TCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGEST: gi|13311850|gb|BG405501.1|BG405501
genomic: AGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAAC-TGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|208299834|gb|GE099613.1|GE099613
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|298182781|gb|HO031516.1|HO031516
genomic: GACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|15813300|gb|BI785575.1|BI785575
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|6724545|gb|AW308944.1|AW308944
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|13252581|gb|BG363484.1|BG363484
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|254338553|gb|GR845696.1|GR845696
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|12497052|gb|BG047373.1|BG047373
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GNAAATGTTGACATACGTAGGAAGACAAATTACCCTCATTGTGGATTCAA ACACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|213594238|gb|DB966139.1|DB966139
genomic: GGAAATGTTGACATACGTAGGAAGACAAATTA-CCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGEST: gi|193413995|gb|FK376589.1|FK376589
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATACTGTAGTTGGATTTCTGTTGGCTGGAGTGGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccactgaattatatgttactaactattctgtagtctgagtatcgttggttttaaccccctaaaacctacaatgtttttcttgtgaaattgtacat
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
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