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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAGgtgggtcatacatccaaattgtcatattcttttgttgttttctctgttttgatttaaattaaggagataattccagtctaccccaagatacagatgtttgttgatttatcctgatggatatacttcactttag

Basic information

species Glycine max
transcript GLYMA08G09370.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09370.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 4
GCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAGgtgggtcatacatccaaattgtcatattcttttgttgttttctctgttttgatttaaattaaggagataattccagtctac---cccaagatacagatgtttgttgatttatcctgatggatatacttcactttag
| | ||||||| || ||||| |||||||||||||||| |||| ||||| ||   ||| |||| |||||| ||||| |||||| |||||||||||||  || |  ||||     | | | | |  |  |||  | | |||  |||||  ||   || | | ||  |   ||  ||     ||||  | | ||| |  |||||                             
GTTGGCTGCATCAAACTGGAGTGGTGAAGGTTCTTTCCTATTCACATCTAGTTCTGCACCATTTGATTGCAATGACAATGGATCATGTGATGAGgt--gttac-catctgtcctataacactaatgagtttctctgtctaatttgagata---taggcatatcttcttagcttatgcttccaattttctgatat--gttgaa----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9902875|gb|BE611843.1|BE611843
EST:     CATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAG                         GATTCTCCGGTTGTGCCTATCGGGAGGAGCCCCGGAGTTGATGTCCTTCTA
genomic: CATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAGgtgggtcata ... ttcactttagGATTCTCCGGTTGTGCCTATCGGGAGGAGCCCCGGAGTTGATGTCCTTCTA
EST: gi|6719063|gb|AW306710.1|AW306710
EST:     CATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAG                         GATTCTCCGGTTGTGCCTATCGGGAGGAGCCCCGGAGTTGATGTCCTTCTA
genomic: CATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAGgtgggtcata ... ttcactttagGATTCTCCGGTTGTGCCTATCGGGAGGAGCCCCGGAGTTGATGTCCTTCTA