1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGAGGAGAGAAGCCAGGAGGATCGAGAGAGATGGTTGAAAATGGGATTGAAAGCTATTTCAGATGGCAAATTAGCCGTGTTGCTTTTATCTGGTGGCCAGgtacatttgaatctgtttttgatgagcgtatacctttgtttttttagtgattagaagatgatgaatgataataatgatgtgttatttcaatattgtttga...
species | Glycine max |
transcript | GLYMA08G09170.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAG GGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAEST: gi|10235209|gb|BE804156.1|BE804156
genomic: ATTTCAGATGGCAAATTAGCCGTGTTGCTTTTATCTGGTGGCCAGgtacatttga ... ttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
EST: AAGCTATTTCAGATGGCAAATTAGCCGTGTTGCTTTTATCTGGTGGCCAG GGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAEST: gi|193334453|gb|FK301715.1|FK301715
genomic: AAGCTATTTCAGATGGCAAATTAGCCGTGTTGCTTTTATCTGGTGGCCAGgtacatttga ... ttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
EST: AAGCTATTTCAGATGGCAAATTAGCCGTGTTGCTTTTATCTGGTGGCCAG GGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
genomic: AAGCTATTTCAGATGGCAAATTAGCCGTGTTGCTTTTATCTGGTGGCCAGgtacatttga ... ttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGAGAGAAGCCAGGAGGATCGAGAGAGATGGTTGAAAATGGGATTGAAAGCTATTTCAGATGGCAAATTAGCCGTGTTGCTTTTATCTGGTGGCCAGgtacatttgaatctgtttttgatgagcgtatacctttgtttttttagtgattagaagatgatgaatgataataatgatgtgttatttcaatattgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG