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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttctattcttaaatagttaaatctcacctactggaatttatgcattaatcccacttcatttattgcgttggtgcttggtaggttagggaagta...

Basic information

species Glycine max
transcript GLYMA08G07670.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307419|gb|FK000761.1|FK000761
EST:     GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG                         GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACT
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
EST: gi|11275013|gb|BF325337.1|BF325337
EST:     GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG                         GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACT
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
EST: gi|163926925|gb|EH038506.1|EH038506
EST:     GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG                         GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACT
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
EST: gi|213601479|gb|DB970409.1|DB970409
EST:     GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG                         GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACT
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
EST: gi|298185371|gb|HO030584.1|HO030584
EST:     GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG                         GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCNNNNNNNN-CTACT
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT
EST: gi|298173449|gb|HO016785.1|HO016785
EST:     GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG                         GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGNNNNNNNCTACT
genomic: GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttc ... cgtgttatagGCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGgtattttttctattcttaaatagttaaatctcacctactggaatttatgcattaatcccacttcatttattgcgttggtgcttggtaggttagggaagta

- - - - - - - - - - - - - AGAAGT