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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAGCCTCATTTTCAAGTGAAGTTTAATGAGTCTGATATTCCCAAAGGTGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatattttatatttatctctcgcatatttaggcattgttgcagatgctatattctggaatctgcattgtactagaaaaaaagaagtaataaaaag...

Basic information

species Glycine max
transcript GLYMA08G06660.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402962|gb|EV272775.1|EV272775
EST:     TGGTGACAGGGCGTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTG                         AATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
EST: gi|151394464|gb|EV264335.1|EV264335
EST:     TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTG                         AATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
EST: gi|151401140|gb|EV270954.1|EV270954
EST:     TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTG                         AATTGGTAGAAGATGTGAATCTCTTGATCAGAAGG-CTGAGAGATGTCTGG
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
EST: gi|51336189|gb|CO980055.1|CO980055
EST:     TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTG                         AATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
EST: gi|9258852|gb|BE346999.1|BE346999
EST:     TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATATG                         GATTTGTACGAAGATGTGAATCTCTTGATC
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTA-GAAGATGTGAATCTCTTGATC
EST: gi|151394843|gb|EV264714.1|EV264714
EST:     TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTG                         AATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG
genomic: TGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatat ... ttccccgcagAATTGGTAGAAGATGTGAATCTCTTGATCAGAAGGGCTGAGAGATGTCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTAAGCCTCATTTTCAAGTGAAGTTTAATGAGTCTGATATTCCCAAAGGTGGTGACAGGGCTTATGGGGCTTATATTCCCCCTGTACCTAGATCATTTGgtaaggatattttatatttatctctcgcatatttaggcattgttgcagatgctatattctggaatctgcattgtactagaaaaaaagaagtaataaaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaaa