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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGATGAAGCTCTAGAGCATGATTCTGCAGCCAAGTTGCCGGTCACGCTGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttctttgatttacctactgctacactgcatagtttttttattttttggaggatatatacatcatagttacaaaacaataagcggaagttgacag...

Basic information

species Glycine max
transcript GLYMA08G05930.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193675801|gb|FK615783.1|FK615783
EST:     TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG                         GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: gi|7233239|gb|AW568587.1|AW568587
EST:     TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG                         GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: gi|192329412|gb|FK021838.1|FK021838
EST:     TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG                         GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: gi|209697397|gb|BW675542.1|BW675542
EST:     TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG                         GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: gi|254324939|gb|GR834364.1|GR834364
EST:     TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG                         GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: gi|207811072|gb|GD782993.1|GD782993
EST:     CTGACAGTTTCATG                         GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
genomic: CTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: gi|151397725|gb|EV267598.1|EV267598
EST:     TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG                         GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
EST: gi|254324938|gb|GR834363.1|GR834363
EST:     TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATG                         GTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttct ... tttttattagGTACAGGTAATTGATTCATTGCCTGAACTGTATCCTAAATTAGAAGCTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATGATGAAGCTCTAGAGCATGATTCTGCAGCCAAGTTGCCGGTCACGCTGGCTCTTTCAAGCCTGTGGGTTCGTAAGAACTATGCTGACAGTTTCATGgtgagtttctttgatttacctactgctacactgcatagtttttttattttttggaggatatatacatcatagttacaaaacaataagcggaagttgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG