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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACTATTAAGATTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttggacttcatttaaatgccctttcagtttgtgtgtgtgtgttttttttctttatatatatatatagcgtgcgttttcaatgatgctgctgctgctctgcag

Basic information

species Glycine max
transcript GLYMA08G05280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05280.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 3
---GTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACTATTAAGATTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATC--ACCCTAGGg-taactt---ggacttcattt------aaatgccctttcagtttgtgtg-tgtgtgttttttttctttatatatatatatagcgtgcgttttcaatgatgctgctgctgctctgcag
   ||| ||||| || |||||  |||||||||| ||| | || |||||||| || ||||||||||| |||||||||||| | | ||| || || |  |   ||||  ||| ||    || ||  |||      ||||  | | |  ||  ||||| ||||    |  ||| |||  ||  || |  |  |   |  ||  |  ||  |   | ||||   |||
CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAAAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaatttttcagatttacttttatgggaaatatcttattggta-gtgtgatgtgcaactagtttgttttcatgaatgttgaatgaaagcattggagcat-ttttggttgcttaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533094|gb|EH261227.1|EH261227
EST:     CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGG                         TTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
genomic: CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttgga ... tgctctgcagTTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
EST: gi|120533228|gb|EH261361.1|EH261361
EST:     CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGG                         TTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
genomic: CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttgga ... tgctctgcagTTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC