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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGgtttgtccttttctacttgattttaagtttgatttttctcatgtttttggaccaagattttgtttgtccatctgatgtggtattttgtggtatactggag...

Basic information

species Glycine max
transcript GLYMA08G04760.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04760.3 (Glycine max), 5'ss of exon 3
lower sequence: AT2G01650.1 (Arabidopsis thaliana), 5'ss of exon 2
GAAGAGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGgtttgtccttttctacttgattttaagtttgatttttctcatgtttttggaccaagattttgtttgtccatctgatgtggtattttgtggtatactggag
 |||||||||| || || ||| || ||  | || ||||| || |||||||| ||||||||||| ||||||||||||||| | ||| |||||||||||||||||           |  ||| ||    || | |||| ||||    |   | ||||  ||||     |  |  |  |||||| ||||||  | | ||    
AAAGAGATACAAAAGAAGTATGATAAGAGTGCAGTTTCCTGACGGAGTTGTGCTTCAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAGgttaac--------atctgaattctctttgggttttactcaa---tgaaggccaaagtttt-----tgaaatttctgtggt-ttttgttttcttctcag-

upper sequence: GLYMA08G04760.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g05570.t01 (Vitis vinifera), 5'ss of exon 2
GAAGAGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGgtttgtcctttt--ctacttgattttaagtttgatttttctcatgtttttggaccaa--gattttgtttgtccatctgatgtggtattttgtggtatactggag
|| ||| |||||||||||| ||||  || | || ||||| ||||||||||| || |||||||| ||| |||| |||||| |||| | |||||||||||||||| ||||| |   | ||||  | ||   | |  |  | ||| ||||      |||   | ||||||  ||  |  | |     ||   |||  |  | |    
GAGGAGGTACACAAAAACTGTTATTCGGGTCCAGTTTCCTGATGGAGTTGTGCTCCAAGGTGTCTTTTCTCCTTGGGAACCAACCAGTGCTCTCTATGAGgttagtcctctcagccacttcttatttgatgttttcctcctcttgttccattcccacctgtttttgtcagtgtaattcagacactaaactgtcattaagt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287661|gb|BI471552.1|BI471552
EST:     TACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAG                         TTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCAT
genomic: TACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGgtttgtcctt ... tgatgtacagTTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCAT