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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTATAGGTGATGTACCAGTTATACTTGCAAAACCACAGACTTTTATGAATTTAAGTGGCGAATCTgtaagtctgctatccggataatattcaaatgtaagcaatagtattttgttgtatctataatgacccgtggttacttttaaaaatcttccacgtctccatg...

Basic information

species Glycine max
transcript GLYMA08G04500.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04500.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G179793_T01 (Zea mays), 5'ss of exon 3
GTTTTATAGGTGATGTACCAGTTATACTTGCAAAACCACAGACTTTTATGAATTTAAGTGGCGAATCTgtaagtctg-ctatccggataatattcaaatgtaagcaatagtattttgttgtatctataatgacccgtggttacttttaaaaatcttccacgtctccatg
|  | || |||||||| || || || ||||| || ||||||||||||||||||  |||||| || |||||||||    |||  |   |     |  ||   || |||| ||  |   | ||   | |  | ||   || |||  |                        
GCCTCATTGGTGATGTCCCTGTAATGCTTGCCAAGCCACAGACTTTTATGAATGCAAGTGGTGAGTCTgtaagtgaaactactccactgcagcttcaa---aatcaattgttctccctagtccttctctttactgctgtttatgtag----------------------