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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatattatttgttttaacctcaagtgtattaacatacatgcttatccagttgtactggtacttcattggatatgttgtttgcatctttgtcaacat...

Basic information

species Glycine max
transcript GLYMA08G04460.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04460.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 3
GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatattatttgttttaacctcaagtgtattaacatacatgcttatccagttgtactggtacttcattggatatgttgtttgcatctttgtcaacat
| ||||||||||| ||||||||||||||||| |||||||||||||  || ||| | ||||||||||| |       ||| ||||||  |   |   |||   |||      | ||  |||| |  | | | |  |||   ||| | | |  |||           
GAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAGgtttt------ttttttttaaatt---gcacattt-tatattcaactgtct-gttggatagat-catagttgaccatggtttcta-atcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924914|gb|AW830940.1|AW830940
EST:     GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG                         GTCTTCACTGCTGA
genomic: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatatt ... catgttttagGTCTTCACTGCTGA
EST: gi|13562624|gb|BG550844.1|BG550844
EST:     GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG                         GTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
genomic: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatatt ... catgttttagGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
EST: gi|209704856|gb|BW673467.1|BW673467
EST:     GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG                         GTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
genomic: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatatt ... catgttttagGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
EST: gi|298170101|gb|HO018725.1|HO018725
EST:     GGGTTGTCGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG                         GTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
genomic: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatatt ... catgttttagGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
EST: gi|209726516|gb|BW658083.1|BW658083
EST:     GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG                         GTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG
genomic: GGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatatt ... catgttttagGTCTTCACTGCTGAGTATTCTTTGATATGCAAAATTTCTGATTACAAGAAG