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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGAGGTTGTTCACAAACTTATTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaattcaaggataatgtatgcaacaacaatctctgctttcttgcatattgaacaagaagtttatataaatgaattaattcttaaattctacag

Basic information

species Glycine max
transcript GLYMA08G03630.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308725|gb|FG999764.1|FG999764
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|213599245|gb|DB960013.1|DB960013
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|151406483|gb|EV276298.1|EV276298
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|4305349|gb|AI443749.1|AI443749
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|192332520|gb|FK025625.1|FK025625
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|42723245|gb|CK769144.1|CK769144
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|8827592|gb|BE211322.1|BE211322
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|19452471|gb|BM953881.1|BM953881
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|298172446|gb|HO019486.1|HO019486
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|298183475|gb|HO028688.1|HO028688
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|22524785|gb|BU083596.1|BU083596
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|298169339|gb|HO020699.1|HO020699
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|21887095|gb|BQ740308.1|BQ740308
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|192332519|gb|FK025624.1|FK025624
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|298171588|gb|HO021180.1|HO021180
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|193672594|gb|FK615912.1|FK615912
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|192308360|gb|FK001346.1|FK001346
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
EST: gi|22522837|gb|BU081648.1|BU081648
EST:     TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGAT                         AGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC
genomic: TTTTTCCTTGGACCATTCTCTATCAATTTTGGGATCCGTCTCCTAATGATgtaagtaatt ... aattctacagAGTAAGGTATGGTGTCCAACTTGAGAAAGGACCATTTGATCGACGGACTGC