1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCATTCTGCTGGTTTTTCTGGTGCCTTGGCAAATCCTCTTTTAGCTTCAGAATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCTgtaagtcttcaaaattaatctttatatattacttaattacttaatacgtgttcatttgtctctcaaaatttaaagattttttataagatgttcttcacctttcttataagacttgaacttttatgaaacatcag
species | Glycine max |
transcript | GLYMA08G03580.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCT GAGAACTATACAGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACATEST: gi|298182820|gb|HO031555.1|HO031555
genomic: AATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCTgtaagtcttc ... gaaacatcagGAGAACTATACAGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACAT
EST: AATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCT GAGAACTATACAGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACATEST: gi|9258253|gb|BE346400.1|BE346400
genomic: AATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCTgtaagtcttc ... gaaacatcagGAGAACTATACAGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACAT
EST: AATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCT GAGAACTATACAGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACATEST: gi|20075700|gb|BQ094475.1|BQ094475
genomic: AATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCTgtaagtcttc ... gaaacatcagGAGAACTATACAGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACAT
EST: AATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCT GAGAACTATACAGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACATEST: gi|21677192|gb|BQ629543.1|BQ629543
genomic: AATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCTgtaagtcttc ... gaaacatcagGAGAACTATACAGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACAT
EST: AATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCT GAGAACTATACAGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACAT
genomic: AATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCTgtaagtcttc ... gaaacatcagGAGAACTATACAGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATTCTGCTGGTTTTTCTGGTGCCTTGGCAAATCCTCTTTTAGCTTCAGAATCAGCTCTAAATAGACTAAATGGTACAATTCTGGAGGAGTTTGTTGCTgtaagtcttcaaaattaatctttatatattacttaattacttaatacgtgttcatttgtctctcaaaatttaaagattttttataagatgttcttcacctttcttataagacttgaacttttatgaaacatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG