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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCAATGTTGTGATGTTAATTGGGTTTTGTGTGGAGGATGGAAGGAGATTGCTAGTTTATGAGTACATCTGCAATGGCTCTCTGGATTCTCATATCTACAgtaaattcctttgaatccttgatttttttttcgctacattcataaccggctgtggagacttctgttcttcttttcatttctagctttacccatactacat...

Basic information

species Glycine max
transcript GLYMA08G03340.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03340.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g51190.2 (Oryza sativa), 5'ss of exon 4
CGCAATGTTGTGATGTTAATTGGGTTTTGTGTGGAGGATGGAAGGAGATTGCTAGTTTATGAGTACATCTGCAATGGCTCTCTGGATTCTCATATCTACAgtaaattcctttgaatccttgatttttttttcgctacattcataaccggctgtggagacttctgttcttcttttcatttctagctttacccatactacat--
|| |||||||| ||| | ||||| || ||||| || ||    ||| | ||||||||||| |||||||| |||||||| || |||||||| ||| ||||  ||||  |  ||   || ||  |  || | |  |    ||  |||    |||  |   |  | |  | |       | | ||||||  |      ||| |   
CGGAATGTTGTAATGCTGATTGGTTTCTGTGTCGAAGACAAGAGGCGTTTGCTAGTTTACGAGTACATTTGCAATGGATCGCTGGATTCCCATCTCTATGgtaagctaattattattctgcaaattctatgtgactgatgaata--tagcttagagcaagtttaatatatagccaactactagctccaaatcatctataacc

upper sequence: GLYMA08G03340.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g41870.1 (Oryza sativa), 5'ss of exon 5
CGCAATGTTGTGATGTTAATTGGGTTTTGTGTGGAGGATGGAAGGAGATTGCTAGTTTATGAGTACATCTGCAATGGCTCTCTGGATTCTCATATCTACAgtaaattcctttgaatccttgatttttttttcgctacattcataaccggctgtggagacttctgttcttcttttcatttctagctttacccatactacat-----
|| |||||||| ||| | |||||  ||||||| |||||| | ||| | ||||| || |||||||||||||||||||| ||  ||||||| ||| | ||  ||||  || |||   | ||||     ||| ||  || |   | |  |   |   || |  ||  || |   |    ||  ||         | | |  |      
CGAAATGTTGTAATGCTGATTGGTCTTTGTGTTGAGGATAGGAGGCGTTTGCTGGTCTATGAGTACATCTGCAATGGATCCTTGGATTCACATCTTTATGgtaagatcattttctttcttg---catttatcagtaaaa--aaaggcaattcgtgataaatcacttgtctgtaaacttggtaatccagttgacagtttacctacg

upper sequence: GLYMA08G03340.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g02430.t01 (Vitis vinifera), 5'ss of exon 4
CGCAATGTTGTGATGTTAATTGGGTTTTGTGTGGAGGATGGAAGGAGATTGCTAGTTTATGAGTACATCTGCAATGGCTCTCTGGATTCTCATATCTACAgtaaattcctttgaatccttgatttttttttcgctacattcataaccggctgtggagacttctgttcttcttttcatttcta-gctttacccatactacat
||||||||||||||| |||| ||||| ||||||||||||||||| || ||||| |||||||| || ||||||||||| ||| ||||||| ||| | ||  |||||||   || | |  ||        | |   ||  || |||      |   |  | |    || |     | | | | | ||  |  |     |   |
CGCAATGTTGTGATGCTAATCGGGTTCTGTGTGGAGGATGGAAGAAGGTTGCTGGTTTATGAATATATCTGCAATGGGTCTTTGGATTCCCATCTTTATGgtaaattgtcttcattttttatccacaatataattat-tttatagtaaaatcatggcaatgtgcttatgaaactgactcccaagcagtcactgctttcttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26269266|gb|CA820329.1|CA820329
EST:     CTAGTTTATGAGTACATCTGCAATGGCTCTCTGGATTCTCATATCTACA                         GACGAAAGGAGAGCGTACTGGAATGGTCTGCTAGGCAAAAGATTGCAGTTG
genomic: CTAGTTTATGAGTACATCTGCAATGGCTCTCTGGATTCTCATATCTACAgtaaattcct ... gaatttgcagGACGAAAGGAGAGCGTACTGGAATGGTCTGCTAGGCAAAAGATTGCAGTTG