1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATCTGGTGAAGCTCATTGGATATTCCTGTGAGGATGACCACCGGTTATTGGTGTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAgtaagctttacatggaatttgcaaatgtatctaaaattttaatttttaaattggaccaaggttatatgtaccgggatcagattattctcgtaattaatat...
species | Glycine max |
transcript | GLYMA08G03070.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTGTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCA GAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGEST: gi|20813131|gb|BQ297609.1|BQ297609
genomic: GGTGTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAgtaagcttta ... tcaatgctagGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATG
EST: GGTGTATGAATACATGGCCAGTGGGAGCTTGGAGAAACATCTTTT-CGCA GAGTGGGCTCAACAT-GACTTGGTCAAAAAGA-TGAAGATTGCTTTACATGEST: gi|298188842|gb|HO035535.1|HO035535
genomic: GGTGTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAgtaagcttta ... tcaatgctagGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATG
EST: ATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCA GAGTGGGCTCAACATTGGCTTGGTCAAAAAGAATGAAGATTGCTTTACATG
genomic: ATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAgtaagcttta ... tcaatgctagGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCTGGTGAAGCTCATTGGATATTCCTGTGAGGATGACCACCGGTTATTGGTGTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAgtaagctttacatggaatttgcaaatgtatctaaaattttaatttttaaattggaccaaggttatatgtaccgggatcagattattctcgtaattaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA