1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCCCTGAGGAAATCAGTGCCATGGTTCTGATCAAGATGAAGGAAACTGCGGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAGgtaactggaagtctgaaacaatttgcgccttatttctccccttcaatttgattgttttcctcctgcttttgcttttattccaatttctcacatttttgtttcaaatgcacag
species | Glycine max |
transcript | GLYMA08G02940.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAG CTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGEST: gi|254343099|gb|GR859261.1|GR859261
genomic: GGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAGgtaactggaa ... aaatgcacagCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTG
EST: GGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAG CTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGEST: gi|254341733|gb|GR852870.1|GR852870
genomic: GGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAGgtaactggaa ... aaatgcacagCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTG
EST: GGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAG CTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGEST: gi|16284523|gb|BI946135.1|BI946135
genomic: GGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAGgtaactggaa ... aaatgcacagCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTG
EST: GGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAG CTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGEST: gi|298177863|gb|HO027416.1|HO027416
genomic: GGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAGgtaactggaa ... aaatgcacagCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTG
EST: GGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAG CTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTG
genomic: GGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAGgtaactggaa ... aaatgcacagCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCTGGTGTCATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCCTGAGGAAATCAGTGCCATGGTTCTGATCAAGATGAAGGAAACTGCGGAAGCATTCCTCGGGAAGAAAATTAATGATGCTGTGGTCACTGTCCCAGgtaactggaagtctgaaacaatttgcgccttatttctccccttcaatttgattgttttcctcctgcttttgcttttattccaatttctcacatttttgtttcaaatgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG