Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGCTTTGTCTCACAGAAACGAAGACCCCAAGAAGGCTTCAAGACCATGGGACAAAGATCGTGATGGTTTTGTGATGGGTGAAGGCTCTGGTGTGCTGgtagaaacttgaacccaaaattttcttttacgctatatatacatcttttactagtaattctaaagcaatatggcctaacaagtttttgttttaacttacttttgttcacctaatgacaacttgattctctatcactgaaaaaaaag

Basic information

species Glycine max
transcript GLYMA08G02850.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02850.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g01730.t01 (Vitis vinifera), 5'ss of exon 3
CAGGGCTTTGTCTCACAGAAACGAAGACCCCAAGAAGGCTTCAAGACCATGGGACAAAGATCGTGATGGTTTTGTGATGGGTGAAGGCTCTGGTGTGCTGgtagaaacttgaacccaaaattttcttttacgctatatatacatcttttactagtaattctaaagcaatatggcctaacaagtttttgttttaacttacttttgttcacctaatgacaacttgattctctatcactgaaaaaaaag
  ||||||||||||| ||||| || |||||  |||| || || |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||  |||   ||    |  || ||||     ||  || | |   | ||  ||  || ||   |   || |       ||   | || |||| | ||  |||||   || | ||    |||    ||  | ||| ||  |||||  
TCGGGCTTTGTCTCAAAGAAATGAGGACCCTCAGAAAGCCTCTAGACCATGGGACAAAGATCGTGATGGCTTTGTCATGGGAGAAGGCTCTGGTGTGCTGgtaataac--aaaattgatgttgtcttcattacttgatttgctagtattg-taacaactc---atttatgttaggctgca---tcttattttcatttgattttggg-acttcatatttactaagctcggt-tcattgtcaaaaag-

upper sequence: GLYMA08G02850.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S52_45V6.1 (Physcomitrella patens), 5'ss of exon 3
CAGGGCTTTGTCTCACAGAAACGAAGACCCCAAGAAGGCTTCAAGACCATGGGACAAAGATCGTGATGGTTTTGTGATGGGTGAAGGCTCTGGTGTGCTGgtagaaacttgaacccaaaattttcttttac-gctatatatacatctttta--ctagtaattctaaagcaatatggccta-----acaagtttttgttttaa---cttacttttgttcacctaatgacaacttgattctctatcactgaaa--aaaaag
|||||||||||||   ||||| ||    ||  | |  || || ||||| |||||||| |||||||| ||||| |||||||| || ||  ||||||||||||||   |  |    ||    | ||  ||    ||| || |   | |   ||   | | | || | || | |   ||  |      |  ||||   | |   |   |||  |||||| |    | ||  || |    |    |||  |  |   |  |||
CAGGGCTTTGTCTACGAGAAATGACAGTCCACAAACTGCCTCCAGACCTTGGGACAAGGATCGTGAAGGTTTCGTGATGGGCGAGGGTGCTGGTGTGCTGgtatgcatgtcggtcctgcttgtttgttggttgctgtagacttagcagatagttttggatttttgaaaccaagcggtgtgtgtagatcagttgcgggtaggattgcttgtttttgtgcgatca-tgctaattcttgtggtaatcgtttgatctatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20448546|gb|BQ252670.1|BQ252670
EST:     GGGACAAAGATCGTCATGGTTTTGTGATGGGTGAAGGCTCTGGTGTGCTG                         GTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAAAATAATAGCA
genomic: GGGACAAAGATCGTGATGGTTTTGTGATGGGTGAAGGCTCTGGTGTGCTGgtagaaactt ... gaaaaaaaagGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAAAATAATAGCA