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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgtaatccaactctaaattgagaaattaggttatctaatcataaattgtttataccgataactatcttacaagtcataccgatgataacattg...

Basic information

species Glycine max
transcript GLYMA08G02840.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02840.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G860590_T01 (Zea mays), 5'ss of exon 3
GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgtaatccaactctaaattgagaaattaggttatctaatcataaattgtttatac--cgataactatcttacaagtca--taccgatgataacattg
|||||||| || ||||| || || || |||||| ||||||||||||| ||||||||||| || || || || ||||| ||||||||| |    | ||||||  | | |  |     | ||  | | | ||  |  ||| |  || |     || ||||   |  | |    |  | |    || | ||
GCTGCAAGCTTCGGAGGATCCAACATCGATCCAGCAGCTTGGGAGGACAAGAAGTGCCCCGGCGAGTCCCGCTTCCCTGCTCAGgtatc----tgatccaatccaacagaggatgctcagcctctatgattgtccattttacatgcaatactagctatagaatgacttgattgtcaaaagaaaaaatg

upper sequence: GLYMA08G02840.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgta-acactgtaatccaactctaaattgagaaattaggttatctaatcataaattgtttataccgataactatcttacaagtcataccgatgataac--attg
|||||||| ||||||||  |||| ||||||||| | ||||||||||| |||||||||||||| ||||| || ||||| ||||||||     ||  ||||  ||| | |  ||  ||| |  ||  |      |  | |  |  |   | | |  |   ||        |    |||   |   ||| 
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttact-tgatctgccaaactgtgtagttgggctactagtcatcaaaggcaa-atttggtttggggtctttgtatatggccatgaatt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208080695|gb|GD875049.1|GD875049
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCCCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|58023594|gb|CX710335.1|CX710335
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|207721092|gb|GD703633.1|GD703633
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|207797287|gb|GD768985.1|GD768985
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193375623|gb|FK340462.1|FK340462
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCGG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACCGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|16347749|gb|BI973344.1|BI973344
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|192321583|gb|FK012919.1|FK012919
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|298177553|gb|HO027220.1|HO027220
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|254342776|gb|GR858938.1|GR858938
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193360097|gb|FK327233.1|FK327233
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193548576|gb|FK505009.1|FK505009
EST:     AGCTTGGGAGGATAAGAAGTTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTAGTAGAAACCACTGGAGGAGGATTCC
genomic: AGCTTGGGAGGATAAGAAGT-GCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTT-GT-GAA-CCACTGGAGGAGGATTCC
EST: gi|208269179|gb|GE068662.1|GE068662
EST:     CTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|192321582|gb|FK012918.1|FK012918
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193329103|gb|FK293107.1|FK293107
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|207681551|gb|GD662858.1|GD662858
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|207822963|gb|GD796956.1|GD796956
EST:     GGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: GGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208113464|gb|GD911593.1|GD911593
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|151413104|gb|EV282912.1|EV282912
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|298172286|gb|HO021878.1|HO021878
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|192323930|gb|FK018651.1|FK018651
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193672410|gb|FK618514.1|FK618514
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208036103|gb|GD833052.1|GD833052
EST:     CTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193685784|gb|FK626298.1|FK626298
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAA-CTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|151406616|gb|EV276431.1|EV276431
EST:     CAGCTTGGGAGGATAATAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208154999|gb|GD954932.1|GD954932
EST:     CTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193324470|gb|FK289642.1|FK289642
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGT
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGT
EST: gi|193508309|gb|FK466152.1|FK466152
EST:     CTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208249696|gb|GE048651.1|GE048651
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208070070|gb|GD868843.1|GD868843
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208179143|gb|GD974504.1|GD974504
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCATTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208197525|gb|GD995442.1|GD995442
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|120496114|gb|EH224281.1|EH224281
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|298171052|gb|HO016084.1|HO016084
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCCTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208190142|gb|GD994486.1|GD994486
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGCTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208275283|gb|GE068103.1|GE068103
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208278697|gb|GE078728.1|GE078728
EST:     AATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: AATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208289087|gb|GE085408.1|GE085408
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|6455600|gb|AW186283.1|AW186283
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193340918|gb|FK307195.1|FK307195
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208131536|gb|GD931611.1|GD931611
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|207848662|gb|GD818427.1|GD818427
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAGTCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|16995947|gb|BM085319.1|BM085319
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193487340|gb|FK450949.1|FK450949
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|208133050|gb|GD928701.1|GD928701
EST:     CCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193390755|gb|FK355513.1|FK355513
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|207777079|gb|GD747880.1|GD747880
EST:     AGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: AGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTT-CCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193328248|gb|FK294269.1|FK294269
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193699523|gb|FK639866.1|FK639866
EST:     AGCTTGGGAGGATAAAGGAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: AGCTTGGGAGGAT-AAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193698364|gb|FK638987.1|FK638987
EST:     CAGCTTGGGAGGATAAGGAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|58019956|gb|CX706698.1|CX706698
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193417593|gb|FK385077.1|FK385077
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193484010|gb|FK452413.1|FK452413
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|193729413|gb|FK667299.1|FK667299
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|207844159|gb|GD817410.1|GD817410
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGA
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGA
EST: gi|23726186|gb|BU761077.1|BU761077
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
EST: gi|151394694|gb|EV264565.1|EV264565
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         -TACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgtaatccaactctaaattgagaaattaggttatctaatcataaattgtttataccgataactatcttacaagtcataccgatgataacattg

- - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT