Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGCCGGAGAAACCGCCGCCGCAATGGCCGCCGCATCCATAGTTTTCAGACGCTCTAACCCTGCCTATGCCGGCGAACTTCTCCGCCATGCCTACCAGgtactacactggctactagcttttacactttagtattatttatttaatataataattattgtgtgataatgagatgggcgcattgtagtgtagaaagtgg...

Basic information

species Glycine max
transcript GLYMA08G02610.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02610.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G11050.1 (Arabidopsis thaliana), 5'ss of exon 3
TCTCGCCGGAGAAACCGCCGCCGCAATGGCCGCCGCATCCATAGTTTTCAGACGCTCTAACCCTGCCTATGCCGGCGAACTTCTCCGCCATGCCTACCAGgtact---acactggctactagcttttacactttagtattattt---atttaatataataattattgtgtgataatgagatgggcgcattgtagtgtagaaagtgg
|||||||||||||||||| ||||||||||| ||||| ||||| |||||| | |||||| | ||  | ||  | |  || || ||||| || ||  | ||||| ||   || ||  | |  | ||   | | |  ||| | | ||    |||| |  ||  | | ||   | |  |     |        |  | | |  ||     
TCTCGCCGGAGAAACCGCTGCCGCAATGGCTGCCGCTTCCATCGTTTTCCGTCGCTCTGATCCATCATACTCTGCTGAGCTACTCCGTCACGCACATCAGgttcttgaaccctaaccaa-aactgagaaaatcgagtttcaattccggtttagtgaaaccaattttaattaagcacattgttctgtttatacaattttcaa-----

upper sequence: GLYMA08G02610.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 3
TCTCGCCGGAGAAACCGCCGCCGCAATGGCCGCCGCATCCATAGTTTTCAGACGCTCTAACCCTGCCTATGCCGGCGAACTTCTCCGCCATGCCTACCAGgtactacactggctactagcttttacactttagtattatttatttaatataataattattgtgtgataatgagatgggcgcattgtagtgtagaaagtgg-----
||| ||||||||||| || ||||| |||||||||||||| || |||||| | || ||||||||||  ||  |  |   ||| |||   || ||||| ||||||  | |||   || |   |    | | ||  || || | ||| |  |   | |   | |  | |      | |      | | || |  ||  |||       
TCTTGCCGGAGAAACAGCAGCCGCCATGGCCGCCGCATCAATTGTTTTCCGCCGATCTAACCCTGTTTACTCTAGGCTACTACTCACTCACGCCTATCAGgtaaaaaactttttatt---tccggcgcctttttactact-attgaggaagcttacgttagcataaagtgtgggtatatttaat-tactacaggcagttacgttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723572|gb|BW682716.1|BW682716
EST:     GACGCTCTAACCCTGCCTATGCCGGCGAACTTCTCCGCCATGCCTACCAG                         CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACG
genomic: GACGCTCTAACCCTGCCTATGCCGGCGAACTTCTCCGCCATGCCTACCAGgtactacact ... tcaatttcagCTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACG
EST: gi|21888585|gb|BQ741798.1|BQ741798
EST:     GACGCTCTAACCCTGCCTATGCCGGCGAACTTCTCCGCCATGCCTACCAG                         CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACG
genomic: GACGCTCTAACCCTGCCTATGCCGGCGAACTTCTCCGCCATGCCTACCAGgtactacact ... tcaatttcagCTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATCACG