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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATCCAAGGAACTGTTGCATGTGAGTCATCATCATCATTTGACTTTGACTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAGgtcagttgaattatgaatacggtatgcctacttatgatttgataatttgattttgctgttctaccaagtatcattatcagactgttgtttccattttttg...

Basic information

species Glycine max
transcript GLYMA08G02420.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207749360|gb|GD719574.1|GD719574
EST:     CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAGgtcagttgaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|15663576|gb|BI700947.1|BI700947
EST:     CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAGgtcagttgaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|13252165|gb|BG363068.1|BG363068
EST:     CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAGgtcagttgaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|6455236|gb|AW185919.1|AW185919
EST:     CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAGgtcagttgaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|193451550|gb|FK420630.1|FK420630
EST:     CTTCTGAAAGATCTCATTATTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: CTTCTGAAAGATCTCATTATTCAGgtcagttgaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|7639786|gb|AW734101.1|AW734101
EST:     CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCNGAAAGAT
genomic: CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAGgtcagttgaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|193377800|gb|FK343256.1|FK343256
EST:     CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: CTCATCATGATCATGTGTACAGAAACCTTCTGAAAGATCTCATTATTCAGgtcagttgaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGAT