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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtttcaatgcagccatagcttcattgaataattgtttatatcatatttaagcagcacaaatatgctccatgggaagtctattggctgttgcacacacacatagcaaaactcactagctcataaatatggttttctcttatgtttag

Basic information

species Glycine max
transcript GLYMA08G01940.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01940.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g31000.1 (Oryza sativa), 5'ss of exon 3
GTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtttcaatgcagccatagcttcattgaataattgtttatatcatatttaagcagcacaaatatgctccatgggaagtctattggctgttgcacacacacatagcaaaactcactagctcataaatatggttttctcttatgtttag
|||| ||||| || || || ||  | |||||||| |||||||| || ||||| || ||||| || || ||||| ||||  ||||||||||||||||| |||| ||  | ||  |||     |    ||  | |||| ||||    |    || | ||      |  |  ||||      | | |  |     ||| |                                                        
GTGTCTGGAAGGTTAGAGTAGAATTGCCTGATGCATATCCTTACAAATCTCCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgag--gatttgatgtccatacccttttctggaatgattgaagcttgtgtaatcaattgttgctgacctgcttttgttggacttga--aaatgtag--------------------------------------------------------

upper sequence: GLYMA08G01940.3 (Glycine max), 5'ss of exon 3
lower sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtttcaatgcagccatagcttcattgaataattgtttatatcatatttaagcagcacaaatatgctccatgggaagtctattggctgttgcacacacacatagcaaaactcactagctcataaatatggttttctcttatgtttag
||||||||||  |||| || || || |||||||| ||||||||||| ||||||||| |||| ||  | | |||||| | ||| |||||||| ||||| |||| ||||   || |  |||   ||| |   ||| |  | || |||| |    | |    | |   | |       ||  |     |||      ||| |       || |||                                         
GTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATgtgagttcaatcgaatcag---tagatcttttggaggagtgattatgttccttctccaaatcttgagtggtgcttatttg----ttatccctctttgtatgtggttat-gcag----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039609|gb|BM307903.1|BM307903
EST:     CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGAT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtt ... ttatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT
EST: gi|298198506|gb|HO040045.1|HO040045
EST:     CCATCTATCGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGAT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtt ... ttatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT
EST: gi|298182580|gb|HO031315.1|HO031315
EST:     CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGAT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtt ... ttatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT
EST: gi|192324802|gb|FK016873.1|FK016873
EST:     CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGAT                         GTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT
genomic: CCATCTATTGGCTTTGTCAACAAAATTTTCCATCCTAATGTGGATGAGATgtaagttgtt ... ttatgtttagGTCTGGTTCTGTTTGCTTAGATGTTATTAGCCAGACTTGGAGTCCAATGTT