Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCTGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAAgtaagcttgcttgtgtagattaggtggaatacatttctatgatccattttacttgttttacacttgcttttctttgggaatgtccatattatgtctcatt...

Basic information

species Glycine max
transcript GLYMA08G01880.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 5'ss of exon 4
AGAATGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCTGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAAgtaag-cttgcttgtgtagattaggtggaatacatttctatgatccattttacttgtt-ttacacttgcttttctttgggaatgtccatattatgtctcatt
 ||    ||||| |||||||||||||||||||| |||||||| || || ||| |||||||||  ||||||||  ||||  |  | || ||| | | |  || |  |  ||   ||   | | ||||| |   | || ||   || | ||| | |    ||| |||   |                     
TGATAAAGGTGAAATGTGTGCAATGAAGGAGGTCACCCTTTTCTCAGACGATCCTAAATCAAAAGAAAGTGCAAAGCAGTTGTGTCAGgtatgacatttttctccacgtttactg---tccttttctttacgctatcttctctgctcttatattattctttatttaccag--------------------

upper sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 3
lower sequence: AC209208.3_FGT001 (Zea mays), 5'ss of exon 3
AGAATGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCTGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAAgtaagcttgcttgtgtagattag-------gtggaatacatttctatgatccattttacttgttttacacttgcttttctttgggaatgtccatattatgtctcatt----------------------------------------------------------
 ||  | ||||| |||||||| ||||||||||| |||||||| || |||||| |||||||||  ||||||||  | || ||  |||| ||| | |  |||||  |  || |        || ||   |   || |      | || | |     ||     |||  ||  |  | || | |   |  | |   ||                                                          
TGACAGAGGTGAAATGTGTGCGATGAAGGAGGTTACCCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTCTGCCAGgtatggtgtcttgtacatgtttgcacaatattgaaaactaggcctgtttggtttcttgcctaagacaccacaacttgcctaagctagtgactaagcttagacaagttgtgaccatcatgcctcatgctgtactttctcttttaacattattatttcatttcacag

upper sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
AGAATGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCTGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAAgtaagcttgcttgtgta-gattaggtggaatac--atttctatgatccattttacttgttttacacttgcttttctttgggaatgtccatattatgtctcatt-
 ||    ||||| |||||||| ||||||||||| || ||||| || |||||| |||||||||  ||||||||  | || ||  |||| ||| | |   ||||  | | | |     ||||   |   |||  |    ||   | ||  | |  ||    || || |   ||  |   ||| |  |||||   
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttttgtacatgttcacactcaatattgaaaactac-acatgttcatcatgcctcatgctgtacttcctcttttaacattattatcacatctcacag

upper sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 5
AGAATGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCTGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAAgtaagcttgcttgtgtagattaggtggaa---tac--atttctatga------tccattttacttgttttacacttgcttttctttggg-----aatgtccatattatgt-ctcatt---------------
 ||| |||| ||||||||||||||||||||||| ||  | ||||| |||||||| || |||| ||||||||| ||||| || ||||||||||| || ||   ||||||  | |||||   | |   |||  | ||          ||||  || ||||    | ||   |  |||       || |  || |||||   || |                 
TGAAAGTGGGGAGATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCAAAGGAAAGTGCACAGCAGCTGGGCCAAgtaagttttctctagtagatatgctggaaacttgctggttttgaagaaaaaaactggttttttttttttttttttggcaccttcttgcacagttaaaggacaaattataaacttaccagtgctatttggcag

upper sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g03850.t01 (Vitis vinifera), 5'ss of exon 2
AGAATGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCTGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAAgtaagcttgcttgtgtagattaggtggaa--tacatttctatgatccattttacttgttttacacttgcttt----tctttgggaatgtccatattatgtctcatt-----------------------
 ||| |||| ||||||||||||||||||||||| ||  | ||||| |||||||| || |||| ||||||||| ||||| || ||||||||||| || ||   ||||||  | |||||  |   ||  | |||   |    ||| |||||    ||  |||     |||   | |       |  |    | ||                        
TGAAAGTGGGGAGATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCAAAGGAAAGTGCACAGCAGCTGGGCCAAgtaagttttctctagtagatacgctggaaacttacttgttttgaagaaaaaaactggtttttttttttttttggcaccttcttgcacagttgaaggaaaaattataaacttaccagtgctatttggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9899677|gb|BE608645.1|BE608645
EST:     TTTTTTCTGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAA                         GAAATTGCAATGCTTAGTCAGTTGCGGCATCCAAATATTGTTCAGTATTAT
genomic: TTTTTTCTGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAAgtaagcttgc ... gcatttgcagGAAATTGCAATGCTTAGTCAGTTGCGGCATCCAAATATTGTTCAGTATTAT