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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGCATGTTGAACTCTCTCAAGGTGTTGGATTTGGGAATGAATCAGTTAACAGGACCAATTCCTCCAGAGATTGGAAATTTGACCCAAGTTATGAAAATgtaaaaggaaattattaattaatatgcacttccagaattgtcaactcttaaattcttttgatggacttgtgttttcaattccattgcattcttgcag

Basic information

species Glycine max
transcript GLYMA08G01640.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01640.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g03700.t01 (Vitis vinifera), 5'ss of exon 4
TGGGCATGTTGAACTCTCTCAAGGTGTTGGATTTGGGAATGAATCAGTTAACAGGACCAATTCCTCCAGAGATTGGAAATTTGACCCAAGTTATGAAAATgtaaaaggaaattattaattaatatgcacttccagaattgtcaactcttaaattcttttgatggacttgtgttttcaattccattgcattcttgcag
| |||   |||||    |||||||| |||||| |||| |||||||| || || || ||||| |||||||||||||| ||||||||     |  | ||||||||||||||| ||   | |   | || |        | | | |  | | | ||||| ||    ||   ||    | |  |   |||||         
TTGGCTCTTTGAAAAACCTCAAGGTCTTGGATCTGGGGATGAATCAATTGACGGGTCCAATCCCTCCAGAGATTGGCAATTTGACTAGCATCGTTAAAATgtaaaaggaatttgacattgggtttg-atggatttgactttaaggtttgatattctcttatctgatcagttcacttatgttttttgcag--------