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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTACAGACCCCTCCGCGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCACCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacacccattctttcataacttcacatccatggtatccaaggaacactatacataggttatatacacagccctagcttcctatactaacatttgaata...

Basic information

species Glycine max
transcript GLYMA08G01290.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01290.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G179002_T03 (Zea mays), 5'ss of exon 3
GCTCTACAGACCCCTCCGCGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCACCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacacccatt----ctttcataacttcacatccatggtatccaaggaacactatacataggttatatacacagccctagcttcctatactaacatttgaata
||| |||||||| |  ||    || || |||||  ||||| ||||||| |||||||| ||||||||||||||||| |||||||| ||||| || ||| ||||||     |      |||  |||  ||  |||   || |   |||    || || |  |   |  | ||  |||   |   ||   | |  |    |      
GCTGTACAGACCACCTCGATGCTCACACTGTTCTATCTGTAATAACTGTGTGGAGCGCTTTGATCACCACTGCCCTTGGGTTGGGCAGTGCATAGGATTGgtaagtttgagaataacttgaatagtttagcattgttgttg--caatatgcattacagtttaatcttgtatccagtagtg--ttatcagaagattgctcagcgg

upper sequence: GLYMA08G01290.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G868588_T01 (Zea mays), 5'ss of exon 3
GCTCTACAGACCCCTCCGCGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCACCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacacccat----tctttcataacttcacatccatggtatccaaggaacactatacataggttatatacacagccctagcttcctatactaacatttgaata
||| |||||||| |  ||    || || || ||  ||||| ||||||| |||||||| ||||| ||||||||||| |||||||| || || || ||| ||||||            |||  |||  ||||||    || |   |||    || || | ||      | ||  |||   |   ||   | |  | || |      
GCTGTACAGACCACCTCGATGCTCACACTGCTCTATCTGTAATAACTGTGTGGAGCGCTTTGACCACCACTGCCCTTGGGTTGGCCAATGCATAGGATTGgtaagtttgggaataccttgaatagtttcacagtgttgttg--caatatgcattacagattaaacttgtatccagtagtg--ttaacagaagagcactcatcag

upper sequence: GLYMA08G01290.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
GCTCTACAGACCCCTCCGCGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCACCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacacccattctttcataacttcacatccatggtatccaaggaacactatacataggttatatacacagccctagcttcctatactaacatttgaata-
| | ||||| || |  ||    || ||||| ||  ||||  | |||||||||||||| ||||| || ||||||||||||||||| || || || || || ||||     |||   | |  ||||   |  ||      |       |  |  | |||   ||| |   || | ||   |    |  || |||      |  
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaa-gtttattaactaagcacttgtgactcagaaagcctgtattgctgttgatatacaatatttcgccaacactttatgttaaatctcacagccccctgt

upper sequence: GLYMA08G01290.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G48760.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTCTACAGACCCCTCCGCGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCACCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacacccattctttcataacttcacatccatggtatccaaggaacactatacataggttatatacacagccctagcttcctatactaacatttgaata---
||| |||||||| | ||| ||||||||||||||  | ||  | |||||||| |||   |||||||||||||| || ||| |||||||||| |||||| ||||||     ||| |||     | ||| |  |    ||    |    || ||||| |||   ||  |       ||| |      |       ||||| |    
GCTTTACAGACCGCCCCGTGCTTCTCATTGTTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTGgtaatggatattttttttcctcatcaaaaaccaattac---aattgca-tatacctagacgattcaagagtaactaacagttatttgggggttttgattgcag

upper sequence: GLYMA08G01290.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g00800.t01 (Vitis vinifera), 5'ss of exon 3
GCTCTACAGACCCCTCCGCGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCACCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacacccattctttcataacttcacatccatggtatccaaggaacactatacataggttatatacacagcccta--gcttcctatactaac-atttgaata
||| || ||||| |  |||  ||| || |||||| | ||  |||| || ||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||    ||||||||  |||||  |    |||| | || ||     | |  |      | | | | || ||  ||  |   |||| | |     | |  || 
GCTTTATAGACCTCCTCGCTGTTCACACTGTTCAATATGCAATAATTGTGTGGAACGATTTGACCATCACTGCCCTTGGGTTGGTCAATGTATTGGACTGgtaatgaacattcttt--taactgtat-cacatgctttctaaatgtaaattaatgccattgacaaatactgcattatgggaacctagatttgttgtctttatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317447|gb|GR826431.1|GR826431
EST:     TGGAGCGATTTGATCACCACTGCCCATGGGTTGGTCAGTGTATTGGACTG                         CGAAATTACAGGTTCTACTACATGTTTGTTTTCTCTGCCACTCTGCTTTGC
genomic: TGGAGCGATTTGATCACCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacaccca ... atggttgcagCGAAATTACAGGTTCTACTACATGTTTGTTTTCTCTGCCACTCTGCTTTGC