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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTCTACGTCTTATGGTGTTGGTGTTGACCTTTGGAGTGTTGGCTGCATTTTGGCCGAGCTACTTACTGGAAAGCCAATCATGCCTGGCCGAACAGAGgtattgctacgagttgttgcatgagtggctttgtatcaaattttattttataggctacttactaactgcaatgactcgttatctgttctcaattacatca...

Basic information

species Glycine max
transcript GLYMA08G01250.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01250.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g00620.t01 (Vitis vinifera), 5'ss of exon 3
GGGGTCTACGTCTTATGGTGTTGGTGTTGACCTTTGGAGTGTTGGCTGCATTTTGGCCGAGCTACTTACTGGAAAGCCAATCATGCCTGGCCGAACAGAGgta------ttgctacgagttgttgcatgagtggctttgtatcaaattttattttataggctacttactaactgcaatgactcgtt---atctgttctcaattacatca
 ||| | || | ||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||  ||| |||||||| |||||||| |||||||||||       |||| |    || | |   ||    | ||  ||  ||     | | | |  ||| |  | ||   |||| | |  ||   |    || |  | ||     
TGGGGCCACTTATTATGGTGTTGGTGTTGACCTTTGGAGTGCTGGCTGCATTTTGGCGGAGTTGCTTGGTGGGAAGCCAATAATGCCTGGACGAACAGAGgtgatctatttgccatcctttttagttggaaaatccttaaat--aaccaattctaacaatctattctcaaat--caatcatttttttaaaataattttttagta-----