1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAGGTGAAATTCCGTTTACCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagttattggcaatgtcaaactcttttgctgctacattttttgtgtcgtgatgttctactcaatggaaatataatttattctagataatgactagtaggaatgacaattttgcttctctgtgtttcag
species | Glycine max |
transcript | GLYMA08G00740.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAAEST: gi|298172796|gb|HO020350.1|HO020350
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAGG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCEST: gi|192331064|gb|FK020284.1|FK020284
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGC
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAAEST: gi|192294016|gb|FG987185.1|FG987185
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAAEST: gi|192330970|gb|FK023125.1|FK023125
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: GGTGAGGTTGTTGAACATGGAGCGCTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAAEST: gi|254330134|gb|GR839687.1|GR839687
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGTGAAATTCCGTTTACCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagttattggcaatgtcaaactcttttgctgctacattttttgtgtcgtgatgttctactcaatggaaatataatttattctagataatgactagtaggaatgacaattttgcttctctgtgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA