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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttag

Basic information

species Glycine max
transcript GLYMA08G00670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 4
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttt-tcattctgacccatcttttattgtaaattttag
||| |||||  || |||||||  | || ||  |||| |||||||||||||  ||| ||||||| ||||||| ||||||||| |||||||| ||||    |    | |   |  |  ||| |   ||| |||    ||||  | |   | |||||     |||  | ||  | || ||                          
GGAAGAGTTAGAAATCTTTTCAAAAGAAGTTGTTCGATTTGGAAATCGTTGCAAGAATCCTCAATGGCACAGCTTGGACCGCTACTTTGAAAAgtgcagtttgatttctgccttgtatttaatgaaggttt--attttaaggca---ctaattt--attttttgtattgattatactag------------------------

upper sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttag
||| ||||||||||| ||||||   || ||  |||| |||||||| || |  ||||||||||||||||| |||||||| || |||||||| ||||   ||   || | | | |  |  |  | |||     ||    || ||| |     |  ||||   ||       |||   |    ||                    
GGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAACCGCTGCAAGGATCCTCAGTGGCATAACTTGGATCGCTACTTTGACAAgtttgattcgtttttcacccctatgttttataaag---caatgatatagggagtattaagttagtgctttgctgcatcaaaatatttcag-------------------

upper sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G046846_T01 (Zea mays), 5'ss of exon 4
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttag
||| ||||||||||| || |||   || ||  |||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||| |||||| ||  | | |   | ||     | | ||       || |||  |||  |  |||  ||| |  |    | ||| || |  | | | || ||   |          
GGAAGAGTTGAAAGTGTTCTCTACAGAAGTTGTTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCACAACTTGGACCGCTACTTTGATAAgtaaaattcactttgagcccttgcaacctatagagacaaagattt-tagggtattaaaaattaac--tcagcgcttttatgcc-atcaaactctttcag----------

upper sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G320615_T01 (Zea mays), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgta--atatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttag
|||  ||||  |||| ||| |  | ||||| ||||| |||||||||||||  ||||||||||||||||| ||||||||| | |||||||| |||||   | |   |   | |  || | ||  |  | || || |  ||   |||  |  |||||||   || |  ||| |||  |  |                         
GGAAAAGTTAGAAGTATTTACAAAAGAGGTCATTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCATAACTTGGACTGCTACTTTGAAAAgtatagtttttttctcagtacctgagtttgtggacgtgtttacttt---aggctactaaatttttttctgtt-tgtattccattag-------------------------

upper sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G077621_T01 (Zea mays), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaattgt-actcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttag
||| |||||  |||| ||  |  | ||||| ||||| |||||||| ||||  ||||||||||||||||| ||||||||||| |||||||| |||||   |   || | | |  || | ||  | || |  || | |||||   |   || || ||||    |   ||| |||  |  |                         
GGAAGAGTTAGAAGTATTCACAAAAGAGGTCATTCGCTTTGGAAACCGTTGCAAGGATCCTCAGTGGCATAACTTGGACCGCTACTTTGAAAAgtatagttttttctcagtacctgagtttgtgtacgcgttta-cttta---ggctactaactttatttctgtttgtattccattag-------------------------

upper sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G148773_T03 (Zea mays), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttag
||| ||||||||||| ||||||   || ||  |||| ||||||||| |||  |||||||||||||||||||| ||| |||| |||||||| ||||||  |  | | |   | |      | | ||       || |||  |||  |   ||  ||| | |     | ||| || |  | | | || ||   |          
GGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAAgtaaagttcactttggacccctgcagcctatagaggcaaaggttt-tagggtattgaaaattaac-tcaggcgcttttatgcc-atcaaactctttcag----------

upper sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G097502_T02 (Zea mays), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttag
||| |||||  |||| ||  |    |||||  |||| |||||||| ||||  ||||||||||| ||||| ||||||||||| |||||||| |||||   |   ||            ||| ||| |||  |    |||            | |||||  |   |   ||||||| |   |    ||  |||           
GGAAGAGTTAGAAGTATTCACAAGAGAGGTTGTTCGCTTTGGAAACCGTTGCAAGGATCCTCAATGGCATAACTTGGACCGCTACTTTGAAAAgtacagt---tt------------ttcttctcagtacttgaatttgagaatgtgtttactttaggttacta-actttcatttttgtctggattccattag---------

upper sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttag
||| ||||||||| | |||   |  || ||  ||||||||||||||| ||  |  |||||||||||||||||||||||||  || ||||||||||||| |   || ||| || | | ||  | |   | || || ||     ||   |  ||||  |  | | ||||||  | | |    | |  || |||  |  ||  ||
GGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAAgtaatgt---ttatac-catttacttgctttggttattgagttt----agatgtcggattt--gtttattatgtttctaatatagtgcctactt-atttcattttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41146182|gb|CK606393.1|CK606393
EST:     AATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAA                         AGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGAATT
genomic: AATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaa ... taaattttagAGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGAATT
EST: gi|193309616|gb|FK277152.1|FK277152
EST:     AATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAA                         AGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGAATT
genomic: AATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaa ... taaattttagAGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGAATT
EST: gi|208131205|gb|GD931092.1|GD931092
EST:     ATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATTACTTTGAGAA                         AGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGA
genomic: ATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGAT-ACTTTGAGAAgtaatatgaa ... taaattttagAGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGA