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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAGGGCTCCCATTAGCATTGAATTGAATAGAGACACCTCTTTAAGCAGCAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACAGGTTTCTGCAAgtaagacccactttcacaccacaattgtttctgaattaaattatcatgtttctcatcctcttgctcttttttcatttctttctgtag

Basic information

species Glycine max
transcript GLYMA07G40300.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40300.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 3
ACCAGGGCTCCCATTAGCATTGAATTGAATAGAGACACCTCTTTAAGCAGCAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACAGGTTTCTGCAAgtaagacccactttcacac-cacaattgtttctgaattaaattatcatgtttctcatcctcttgctcttttttcatttctttctgtag-----------------------------------------
||  ||||||| |||| |||||| |||| ||||||    ||  | ||||||||| |||| ||| |||||||||||||||||| |||||| |||||||||||||||| |  | |     | || |     ||  | | | | || | | | |  |  | |   |    |    |   ||   |   ||                                          
ACACGGGCTCCTATTATCATTGATTTGAGTAGAGAAGAATCACTGAGCAGCAAGGCAATAATCTTGCAAATTGACAATAAAAATCAACAAGTTTCTGCAAgtaagagctccctatgtgcacatatgcaatttagcaatgatttgtgaagctatttctgcatgtaagatgcaatgcattagattaatatttgactaatatttccgtttttttcgaatgtgtgtattacag

upper sequence: GLYMA07G40300.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 3
ACCAGGGCTCCCATTAGCATTGAATTGAATAGAGACACCTCTTTAAGCAGCAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACAGGTTTCTGCAAgtaagacccactttcacaccacaattgtttctgaattaaattatcatgtttctcatcctcttgctcttttttcatttctttctgtag------------------------------------------
||  | ||||| || |  ||||||||||  || || |  ||||| ||||||||| |||| ||| ||||||| ||||||||| ||||||| ||||||||||||||| | |  | |   | || |     ||  | | |    | | | | |  |  | |  ||    |      |||||  || ||                                            
ACACGAGCTCCTATAATAATTGAATTGAGCAGGGAGAGTTCTTTGAGCAGCAAGGCAATTATCTTGCAAATCGACAATAAATCTCAACAAGTTTCTGCAAgtaagtctctatctatgaacatatgcaatttagcaatgctatgtgaggctctttctgcatttatgataaaaaaatttcgatcagtcttctcataatatctccattgtgttctacatgggtatattttag

upper sequence: GLYMA07G40300.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 3
ACCAGGGCTCCCATTAGCATTGAATTGAATAGAGACACCTCTTTAAGCAGCAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACAGGTTTCTGCAAgtaagacccactttcacaccacaattgtttctgaattaaattatcat--gtttctcatcctcttgctcttttttcatttctttctgtag---------------------------------------------------------------------------------------
||  | |||||||| |||||||| || ||||| ||  | ||| ||||||| |  || |||||  ||||||||||||||||| |||| || ||||||||||||||| ||   |  || |   |   |  || |   ||        |   |||   || | ||      |  | |   |    |   |||                                                                                       
ACTCGCGCTCCCATAAGCATTGATTTAAATAGGGATGCTTCTGTAAGCAGTAGATCGATCATATTGCAAATTGACAATAAATCTCAGCAAGTTTCTGCAAgtaaggcctcttaccatagggcctataattttactttgctcccctaaaggttctccaccatcacatgttgatgtatatcaactgcatagatccattggtagcaatttaaaatggactgaattgttattatgatggctttaaccatgacccttgttttcttttttggtgtattatag