Sequence
atgc intronic sequence ATGC exonic sequenceTTTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAGgttgatatctgcagattttatcaactggtcttagagttctatccaatagcactgtcctcagtgtgtgtttttatttctattcgtcaataattgccttttc...
Basic information
species | Glycine max |
transcript | GLYMA07G40290.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G40290.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 5'ss of exon 6
TTTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAGgttgatatctgcagattttatca-actggtcttagagttctatccaatagcactgtcctcagtgtgtgtttttatttctattcgtcaata-attgccttttc
|||||| || ||||||||||||||||||||||| ||||| |||||||| || || || |||||||||||| | | | || ||| | || | || | || | | | || | ||| | | | | || | || ||| | || | |
TTTTGACGAGTTCTTGATGGACATGAAGCAAAGCAAAAGGAAAAATATCCGACAGGAACGCAAAAAGgtttgtttagtttcctcttttcatatcatcctcattgtgcaatttattcttg-tctcttaagtttctttgctcatgtgaatagtaaaatggaatggttact-
upper sequence: GLYMA07G40290.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0035g01750.t01 (Vitis vinifera), 5'ss of exon 7
TTTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAGgttgatatctgcaga-----ttttatcaactggtcttagagttctatccaatagcactgtcctcagtgtgtgttttt--atttctattcgtcaataattgccttttc
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | | | | | |||| | ||| | | | | | || | || | | | | ||||| | || ||| ||
TTTTGATGAGTTCTTGATGGACATGAAGCAAAGTAAAAGGAAAAATATTCGTCAAGAGCGCAAAAAGgttagtcttttaaaacagtgttttgttttctgcttatgcatcattctgcacaaaatgtgaaataaaaacaaagtaaaggaaaaatattcataaagaat-gc------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192318530|gb|FK008274.1|FK008274EST: TGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAG ATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATGAAATAAAG
genomic: TGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAGgttgatatct ... ttgtatgcagATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATGAAATAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAGgttgatatctgcagattttatcaactggtcttagagttctatccaatagcactgtcctcagtgtgtgtttttatttctattcgtcaataattgccttttc
- - - - - - - - - - - TGAAGC
- - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - AAGAAA