1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTGATGATGCACTGCGTTTGGTATTTGAGACAGACTGCACCGACATGTTCAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGACCTACAAgtaagtagtaaatacccaatgctctgtttggataaacttctcaataagtatttataggaaaataaaataagaaggtaaaataaattaagattctcccata...
species | Glycine max |
transcript | GLYMA07G39530.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGACCTACAA AGGAGTCACAGGCTAAACGAGTGAAGCTGGATGCTGAAATEST: gi|207804393|gb|GD776362.1|GD776362
genomic: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGACCTACAAgtaagtagta ... gtcactccagAGGAGTCACAGGCTAAACGAGTGAAGCTGGATGCTGAAAT
EST: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGACCTACAA AGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAEST: gi|308098694|gb|HO760435.1|HO760435
genomic: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGACCTACAAgtaagtagta ... gtcactccagAGGAGTCACAGGCTAAACGAGTGAAGCTGGATGCTGAAATTAA
EST: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGACCTACAA AGGAGTCACAGGCTAAACGAGTGAAGCTGGATGCTGAAATTAAAATTGAAAEST: gi|193583211|gb|FK538831.1|FK538831
genomic: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGACCTACAAgtaagtagta ... gtcactccagAGGAGTCACAGGCTAAACGAGTGAAGCTGGATGCTGAAATTAAAATTGAAA
EST: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAA AGGAGTCACAGGCTAAACGAGTGAAGEST: gi|192306779|gb|FG998146.1|FG998146
genomic: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGACCTACAAgtaagtagta ... gtcactccagAGGAGTCACAGGCTAAACGAGTGAAG
EST: CATTATCCCACTTGGACCTACAA AGGAGTCACAGGCTAAACGAGTGAAGCTGGATGCTGAAATTAAAATTGAAA
genomic: CATTATCCCACTTGGACCTACAAgtaagtagta ... gtcactccagAGGAGTCACAGGCTAAACGAGTGAAGCTGGATGCTGAAATTAAAATTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGATGATGCACTGCGTTTGGTATTTGAGACAGACTGCACCGACATGTTCAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGACCTACAAgtaagtagtaaatacccaatgctctgtttggataaacttctcaataagtatttataggaaaataaaataagaaggtaaaataaattaagattctcccata
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctccc