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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAGCACATTGTATGGTTTCAGGGGTGGTCCAGCTGGCATCATGAAGTGCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAGgtttattttcctataagtgtagttttgacacaatatattacctttattttttttaattttattgttcttatggaaatttattacttgtatatttggagct...

Basic information

species Glycine max
transcript GLYMA07G39380.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 3
AGGAAGCACATTGTATGGTTTCAGGGGTGGTCCAGCTGGCATCATGAAGTGCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAGgtttattttcctataagtg-tagttttgacacaatatattacctttattttttttaattttattgttcttatggaaatt-tattacttgtatatttggagct
||||  |    ||||||| |||| ||| |||||||||||  ||||||||||||| |||||||| || ||  | || ||| | || || |||||||| ||||| ||    | || |     ||    ||  |     |   |  ||       |     ||   || | || || ||||  | ||| ||   ||  ||| |  
AGGATCCGTCATGTATGGATTCAAGGGAGGTCCAGCTGGAGTCATGAAGTGCAAGTACGTTGAGCTCACTGCGGATTATGTGTACCCCTACAGAAACCAGgtatagcaacttagattcactaagcatgctattgggtcgaaaattcgacaggtgcctattctctgattttctgtaaatcatgttagtttagtaggtggtg--

upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 3
AGGAAGCACATTGTATGGTTTCAGGGGTGGTCCAGCTGGCATCATGAAGTGCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAGgtttattttcctataagtgtagttttgacacaatatattacctttattttttttaattttattgttcttatggaaatttattacttgtatatttggagct----------
||| ||||| |||||||| || | ||| || |||||||| |||||||||||||| || || ||||| || ||||||| | | ||||| ||||||||||||||  |    | ||||  |    | || |    || | |||   ||    |||   |  |||||   || |   |   | |||| ||      ||  | ||          
AGGCAGCACCTTGTATGGATTTAAGGGAGGCCCAGCTGGGATCATGAAGTGCAAGTATGTAGAACTCACTTCAGACTTTGTGTATCCCTACAGAAATCAGgtacagcaacatatactt----tgttaattatatgtgttaatgtt----tttgcgaaattatta--ctaacaaagcgtgattagttcagcgatttaacctttgtagtaat

upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G12000.1 (Arabidopsis thaliana), 5'ss of exon 3
AGGAAGCACATTGTATGGTTTCAGGGGTGGTCCAGCTGGCATCATGAAGTGCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAGgttt----------attttcctataagtgtagttttgacac-------aatatattacctttattttt--tttaattttattgttcttatggaaatttat-----tacttgtatatttggagct-----
||| |||||||| || || |||| ||||||||||||||| |||||||| |||||||| |||||  | |   | || |||||| | ||||||||||| |||||            ||  | | | |||  | |  || ||||        || |    | ||  |  ||  || ||| |  ||||  || |       | |     || || | | |||||         
AGGTAGCACATTTTACGGGTTCAAGGGTGGTCCAGCTGGTATCATGAAATGCAAATATGTTGAGTTGAATGCTGAATATATTCAGCCTTACAGAAACCAGgtacttggattcagatccttccacaagatttgaatttacactccactagatgtggagcattagtccttggttaaatatacttgtctttttaagtcgatgtggttataattctttttttggtctcaacag

upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 3
AGGAAGCACATTGTATGGTTTCAGGGGTGGTCCAGCTGGCATCATGAAGTGCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAGgtttattttcctataagtgtagttt-tgacacaatatattacctttattttttttaattttattgttcttatggaaatttattacttgtatatttggagct
|||||||||| ||||||| |||| ||||||||| ||||| ||||||||||||||||| ||||||||   ||| || | ||| |||||||| |||||||||||     || || || || || ||| |        || | |      |  | |  ||| || ||   ||  |    || ||      |  |   ||   ||
AGGAAGCACACTGTATGGGTTCAAGGGTGGTCCCGCTGGGATCATGAAGTGCAAATATGTTGAACTCGACTCTGAATTTATCTATCCTTATAGAAATCAGgtgaggctttcttta-gtataatttgtagtttctaatgtaaatcagctgctatcaaatatttttcaactatttttcatctaaattgaggttgactgagact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254318249|gb|GR832417.1|GR832417
EST:     GCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAG                         GGTGGTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAG
genomic: GCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAGgtttattttc ... ctgttggtagGGTGGTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAG
EST: gi|7591049|gb|AW706790.1|AW706790
EST:     GCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAG                         GGTGGTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAG
genomic: GCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAGgtttattttc ... ctgttggtagGGTGGTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAG
EST: gi|193585833|gb|FK541233.1|FK541233
EST:     GCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAG                         GGTGGTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACT
genomic: GCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAGgtttattttc ... ctgttggtagGGTGGTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACT
EST: gi|254323780|gb|GR836119.1|GR836119
EST:     GCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAG                         GGTGGTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAG
genomic: GCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAGgtttattttc ... ctgttggtagGGTGGTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAG
EST: gi|208184291|gb|GD986195.1|GD986195
EST:     GCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAG                         GGTGGTTTTGACATGATTCGCAGTGGGAGGGACGAGATTGAAACTCCAGAG
genomic: GCAAATACGTTGAACTTACCTCAGACTATATTTATCCTTACAGAAATCAGgtttattttc ... ctgttggtagGGTGGTTTTGACATGATTCGCAGTGGGAGGGACAAGATTGAAACTCCAGAG