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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCAGGTGAAGAAGAAACAATTTTTCCGCAATTTTATGACTATAATGCTCTTTGGTGCAGTTGGTACTTTGATATCATTCTGCATCATATCACTAGgtaattgaagtcttcaattaatgcttcttttataaattaaaatacaaagtagtaacaattcatatttggtagtcagtgctttgtgtttcaatttgtttataaatcttatttattttgattag

Basic information

species Glycine max
transcript GLYMA07G38160.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 3
GTTTCAGGTGAAGAAGAAACAATTTTTCCGCAATTTTATGACTATAATGCTCTTTGGTGCAGTTGGTACTTTGATATCATTCTGCATCATATCACTAGgtaattgaagtcttcaattaatgcttcttttataaattaaaatacaaagtagtaacaattcatatttggtagtcagtgctttgtgtttcaatttgtttataaatcttatttattttgattag
||| || || ||||||||||||||||||||||| || |||||||| | | | ||||||||  |||| ||  | || || ||| |  | || || || ||||| |    |      ||||   ||   |   |  ||    |                |||| | |   | || || | ||   |  ||                                
GTTCCAAGTTAAGAAGAAACAATTTTTCCGCAACTTCATGACTATTACGTTGTTTGGTGCGATTGGGACCCTAATCTCTTTCAGTGTAATTTCCCTCGgtaagttgttttcctctttaaattttacctggcatgttcttttgtg------------ctcatctctctcactc-gtacattccatcacag-------------------------------

upper sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 4
GTTTCAGGTGAAGAAGAAACAATTTTTCCGCAATTTTATGACTATAATGCTCTTTGGTGCAGTTGGTACTTTGATATCATTCTGCATCATATCACTAGgtaa----ttgaagtcttcaattaatgcttcttttataaattaaaatacaaagtagtaacaattcatatttggtagtcagtgctttgtgtttcaatttgtttataaatcttatttattttgattag
|||||| || ||||| |||||||| ||||||||||||||||| || ||  | |||||||| || || || |||||||| ||    || || || ||||||||     |||| ||||   | |       |  | | | ||    | || | || | |    ||| |   | ||  ||    | ||     | |       |||                     
GTTTCAAGTAAAGAAAAAACAATTCTTCCGCAATTTTATGACAATTATTTTATTTGGTGCTGTGGGGACATTGATATCCTTTGTGATAATCTCTCTAGgtaagttgctgaattctttgctcagcttacatcatcttattttggttccatattaatga----tcacaa--gataaccaactatatgaacacctacaccaaaatac--------------------