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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCCACTGACTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGCAAGCCTATTATGCCCGGTCGAACCGAGgtaatctctaaatgattaatttcattttataatttctctacgggcatctttcaagtttcaagagcataaaatatatccactttacttgtccgtggtgcaagattttgttgctcgtgttaaaaggtttttgcttctgatttggttgatatatatccactgtgcttcatag

Basic information

species Glycine max
transcript GLYMA07G38140.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38140.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G873277_T01 (Zea mays), 5'ss of exon 3
TGGAGCCACTGACTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGCAAGCCTATTATGCCCGGTCGAACCGAGgtaatct-ctaaatgattaatttcattttataat-ttctctacgggcatctttcaagtttcaagagcataaaatatatccactttacttgtccgtggtgcaagattttgttgctcgtgttaaaaggtttttgcttctgatttggttgatatatatccactgtgcttcatag
 || || || || ||||| || || || ||| | |||||||| || || || || ||||||||| ||||||| |||||||||||||| || || || ||||| | || |  |||| || |   | ||  || || |||||   |     |  ||  | |   ||  | |   || ||     | |  ||  |   | ||| |                                                                     
GGGTGCGACGGATTATGGAGTTGGCGTAGACTTGTGGAGTGCAGGATGTATACTGGCTGAATTGCTGGCTGGAAAGCCTATTATGCCTGGACGGACTGAGgttagctacagaatgcttgac--cgttgcatcatattctccctgaaataccatctggctatcagcacttgccatttaag-gttctgtttaccaaggctgcgaa--------------------------------------------------------------------

upper sequence: GLYMA07G38140.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0020g01890.t01 (Vitis vinifera), 5'ss of exon 3
TGGAGCCACTGACTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGCAAGCCTATTATGCCCGGTCGAACCGAGgtaatctctaaatgattaatttcattttataatttctctacgggcatctttcaagtttcaagagcataaaatatatccactttacttgtccgtggtgcaagattttgttgctcgtgttaaaaggtttttgcttctgatttggttgatatatatccactgtgcttcatag
||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||| || |||||||| ||||| ||||| ||||||||||  || | |  ||  |||| |  | |   ||  || |  |    |||| || ||| |   |||| |  | |   |  |||  |    || ||||     | |||                                                              
TGGGGCCACCGAATATGGTGTAGGTGTGGACCTCTGGAGTGCTGGCTGCATTCTAGCTGAGTTATTGGCCGGGAAGCCTATCATGCCTGGTCGCACCGAGgtaacttcaacaatatatatttaaaatga--gttgttccattg----ctttgaacttttagttgcatta--tttgggctgtttgttatggcgaggtggttattcttgc-------------------------------------------------------------