1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGCCACTGGAGAAGAAGTCTCAGCAGAGGATTTGGGAGGTGCTACTGTGCACTGCAAGACGTCAGGTGTTTCTGATTATTTTGCTCAAGgtatttgccgtggatactttctcttgcatacatctgagggtatagaaaatgcgataactaatgacatcaacttagttcctatttgtgactttgtacatgttttgtttcttgtag
species | Glycine max |
transcript | GLYMA07G33620.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCTACTGTGCACTGCAAGACGTCAGGTGTTTCTGATTATTTTGCTCAAG ATGAACTCCATGCTCTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATAEST: gi|13478129|gb|BG507735.1|BG507735
genomic: TGCTACTGTGCACTGCAAGACGTCAGGTGTTTCTGATTATTTTGCTCAAGgtatttgccg ... tttcttgtagATGAACTCCATGCTCTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATA
EST: TGCTACTGTGCACTGCAAGACGTCAGGTGTTTCTGATTATTTTGCTCAAG ATGAACTCCATGCTCTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATAEST: gi|193667122|gb|FK608030.1|FK608030
genomic: TGCTACTGTGCACTGCAAGACGTCAGGTGTTTCTGATTATTTTGCTCAAGgtatttgccg ... tttcttgtagATGAACTCCATGCTCTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATA
EST: TGCTACTGTGCACTGCAAGACGTCAGGTGTTTCTGATTATTTTGCTCAAG ATGAACTCCATGCTCTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATA
genomic: TGCTACTGTGCACTGCAAGACGTCAGGTGTTTCTGATTATTTTGCTCAAGgtatttgccg ... tttcttgtagATGAACTCCATGCTCTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCCACTGGAGAAGAAGTCTCAGCAGAGGATTTGGGAGGTGCTACTGTGCACTGCAAGACGTCAGGTGTTTCTGATTATTTTGCTCAAGgtatttgccgtggatactttctcttgcatacatctgagggtatagaaaatgcgataactaatgacatcaacttagttcctatttgtgactttgtacatgttttgtttcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA