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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgttctactgcttcaatctattgttgttttggtttataattgattgatgttggcagcattgatccaactgccatgttctgcatttggctgcgg...

Basic information

species Glycine max
transcript GLYMA07G31840.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 4
GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgttctactgcttcaatctattgttgttttggtttataattgattgatgttggcagcattgatccaac--tgccatgttctgcatttggctgcgg
|| ||||| ||||| ||||  || || |||||||| || || ||||||||||||||||||||||| ||  |||| ||||| || ||| | || || || ||||  || | |||| |       |||||| |||  ||         | |   ||| ||     | ||| ||  ||  |   |||||     | |||| |   
GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggctctatt-------tctattattgactt---------tcg---gatattcatgcccttgctctgaccatattatgttacttgtatggcag---

upper sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 4
---------GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgttctactgcttcaatctattgttgttttggtttataattgattgatgttggcagcattgatccaactgccatgttctgcatttggctgcgg
         || ||||| ||||| ||||  ||||| |||||||||||||| ||||| |||||||| ||||| |||||  |||||||||| || ||| ||||||| |||||||   |   | ||   || || | || |                                                                       
GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggtcgtgtccgccttctgctccacagaggtatatagactgtat--ctccattgtactc----------------------------------------------------------------------

upper sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgta---ggaatgttctactgcttcaatctattgttgttttggtttataattgattgatgttggcagcattgatccaactgccatgttctgcatttggctgcgg
|| ||||| ||||| ||||  ||||| |||||||||||||| ||||| |||||||| ||||| |||||  |||||||||| || ||| ||||||| |||||||    || |||    |   |  | |||          |  ||||    || ||  | |  | |   |||||   | |    |                   
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag-----------------

upper sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G054136_T06 (Zea mays), 5'ss of exon 3
GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgttctactgcttcaatctattgttgttttggtttataatt--gattgatgttggcagcattgatccaactgccatgttctgcatttggctgcgg
|| ||||| ||||| ||||  ||||| |||||||| ||||| ||||| |||||||| |||||  ||||  ||||||||||||| ||| |||||||||| ||||   |   |       | || | || | |        | | | | |  ||||  | |  | |   | |||   | | |  |          ||  | |  
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtagggactccctgcttcc--

upper sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 3
GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgttctactgcttcaatctattgttgttttggtttataat--tgattgatgttggcagcattgatccaactgccatgttctgcatttggctgcgg
|| ||||| ||||| ||||  ||||| |||||||| ||||| ||||| |||||||| |||||  ||||  ||||||||||||| ||| |||||||||| ||||   |   |       | || | || | |        | | | |   |||||  | |  | |   | |||   | | |  |                   
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtag-----------------

upper sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 4
GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgttctactgcttcaatctattgttgttttggtttataat--tgattgatgttggcagcattgatccaactgccatgttctgcatttggctgcgg
|| ||||| ||||| ||||  ||||| |||||||| ||||| ||||| |||||||| |||||  ||||  ||||||||||||| ||| |||||||||| ||||   |   |       | || | || | |        | | | |   |||||  | |  | |   | |||   | | |  |                   
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatgtccagtgtactctcaacaccatcttttactctgattcttatctgaacattcgatatcaattctgtag-----------------

upper sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgttctactgcttcaatctattgttgttttg-gtttataattgattgatgttggcagcattgatccaactgccat-gttctgcatttggctgcgg-----------
||||| |||||||| ||||  ||||| || || || ||||| ||||| ||||||||||||||  |||| || || |||||||| |||||||| ||  ||||||   |     || | | |   | | ||    |||||  | |||||| ||||  | || |      ||       |||  | | |   ||||     |              
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaaca-taatacct---tttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacag

upper sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 4
GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgta---------ggaatgttctactgcttcaa--tctattgttgtttt--ggtttataattgattg-atgttggcagcattgatccaactgccatgttctgcatttggctgcgg
|| ||||||||||| ||||  ||||| |||||||| ||||| || || |||||||||||||| ||||| ||||| |||||| | |||||||| ||||| |||          ||| ||||||| | ||| ||     ||        |   ||| ||| ||   || | |||||    ||       | | | |  || ||| | |    || |
GGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGCTTCATAGGGgtgagtaaactgggactgttctaatccttaaaaactgatcacaacccttaagttcatatttttatgcaagttgggtctatgagatttattac-actttatgcttatttgagcag

upper sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtagg-----aatgttctactgct-tcaatctattg--------ttgttttggtttataattgattgatg----ttggcagcat-tgatccaactgccatgttctgc-atttggctgcgg-------------------------------------
|| ||||| ||||||||||  || || |||||||| ||||| ||||| ||||||||||||||| | || |||||||||||| | || ||||||||||||||| ||       || | || |  | |   |  | ||        |  ||   |||||  || |||    |    || | ||||| |  | | |   ||||||| ||     | |     |                                     
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7684901|gb|AW755549.1|AW755549
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|208239627|gb|GE036697.1|GE036697
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGG
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGG
EST: gi|7692658|gb|AW760759.1|AW760759
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|58015016|gb|CX701758.1|CX701758
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATAT-GAAGGGCGCAATGGAGAGCGTAGAAGG
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAA-GGCGCAATGGAGAGCGTAGAAGG
EST: gi|6916434|gb|AW397964.1|AW397964
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|6718573|gb|AW306220.1|AW306220
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTACAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|16344376|gb|BI969971.1|BI969971
EST:     GAAGCAGGGAGTGCTGACCNNNNNTCGTGTTCGACTNNNGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|208284798|gb|GE085612.1|GE085612
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGG
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGG
EST: gi|151395160|gb|EV265031.1|EV265031
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACCCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|193520977|gb|FK482426.1|FK482426
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|193418876|gb|FK385228.1|FK385228
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|15662387|gb|BI699758.1|BI699758
EST:     TGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: TGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|16997201|gb|BM086573.1|BM086573
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|193312731|gb|FK280799.1|FK280799
EST:     CGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: CGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|57574317|gb|CX547292.1|CX547292
EST:     -AGCCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: AAG-CAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|8825892|gb|BE209622.1|BE209622
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA